Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0553
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 254 HLDIGGGDPGASGEDVSCAKSEGE 183
           H+   GGD   S ++V   K EG+
Sbjct: 3   HVSSSGGDDLGSTDEVKVFKDEGD 26


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 181 SSPSLLAQLTSSPEAPGSPPP 243
           SSP L  +++ SP  P +P P
Sbjct: 83  SSPILAEKVSVSPTTPPTPSP 103


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 181  SSPSLLAQLTSSPEAPGSPP 240
            S PS    + ++ E PG PP
Sbjct: 980  SEPSETVTIITAEEVPGGPP 999


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
 Frame = -3

Query: 581 RGPPESPLQ---VLRPLEPSTQ 525
           RGPP +PLQ   V   L+P  Q
Sbjct: 58  RGPPRTPLQPKLVAGKLKPKRQ 79


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 319 LHQQHPAHQPSQWKQQLCWYLG 384
           + +QHP H     +QQ   Y G
Sbjct: 171 MQEQHPQHHQPHHQQQHMMYGG 192



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 319 LHQQHPAHQPSQWKQQ 366
           +HQQ P HQ    +QQ
Sbjct: 198 MHQQGPPHQQPPIQQQ 213


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 319 LHQQHPAHQPSQWKQQLCWYLG 384
           + +QHP H     +QQ   Y G
Sbjct: 173 MQEQHPQHHQPHHQQQHMMYGG 194



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 319 LHQQHPAHQPSQWKQQ 366
           +HQQ P HQ    +QQ
Sbjct: 200 MHQQGPPHQQPPIQQQ 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,042
Number of Sequences: 336
Number of extensions: 2581
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)