Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0553
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 30 1.6
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 2.8
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509 29 2.8
11_06_0156 + 20748472-20748951 29 3.8
03_02_0647 + 10154668-10156041 29 3.8
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 5.0
11_08_0086 + 28268227-28270008 28 6.6
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297... 28 6.6
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 6.6
10_06_0020 - 9693126-9693437,9694940-9695368 27 8.7
08_02_1243 - 25527523-25527960,25527993-25528604 27 8.7
06_03_0854 + 25400855-25403741,25406174-25407708 27 8.7
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 27 8.7
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 107 PQMEVLPFVSAITSPARWG*APALAAEPPTILV 9
P LPF S + + AR G APAL+A P LV
Sbjct: 11 PARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 251 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 159
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
Length = 332
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 487 PHVWKQCVIASTLCVDGSNGRSTC-SGDSGGPLTIGNGG 600
P W + A TLC + + G+ TC +GD G NGG
Sbjct: 68 PASWSGRMWARTLCAEDATGKFTCATGDCGSGGIQCNGG 106
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 434 CWLPKQHRRSFRSRQPRPKY 375
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>03_02_0647 + 10154668-10156041
Length = 457
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 600 SAVADGERPAGVSAAGAATVRAVNTEGGGND 508
+AVAD P V A G +V AV T G G D
Sbjct: 364 AAVADAGGPPAVIAGGRDSVLAVATAGAGRD 394
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 103 RWKFCHSSVRSQVQQDGGEHQRWRQNHPQSW 11
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>11_08_0086 + 28268227-28270008
Length = 593
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 578 GPPESPLQVLRPLEPST---QRVEAMTHCFQTC 489
GPPE + ++ L+P+ QR+E HC +C
Sbjct: 345 GPPEVRITIVDILQPAFRPFQRIEEAGHCLSSC 377
>10_08_0105 -
14828097-14828226,14828371-14828547,14829690-14829739,
14829841-14829909,14829976-14830074,14830148-14830226,
14830587-14830687,14830794-14830862,14831019-14831059,
14831313-14831663,14831676-14832511,14832674-14832777,
14833587-14834003,14836108-14836491
Length = 968
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 576 PAGVS-AAGAATVRAVNTEGGGNDTLFPNVRAQTALVM 466
PAGVS AA AA V E GG+D + Q L M
Sbjct: 33 PAGVSSAAAAAVVEEAEMETGGDDFITQEEEYQIQLAM 70
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 181 SSPSLLAQLTSSPEAPGSPPP 243
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>10_06_0020 - 9693126-9693437,9694940-9695368
Length = 246
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 RRYQDCGWFCRQRWCS 50
RR + C W+ Q+WCS
Sbjct: 114 RRRRSCSWWSSQQWCS 129
>08_02_1243 - 25527523-25527960,25527993-25528604
Length = 349
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 393 PASEGPPMLLREPTTNKNAK*ASRSLPTPSAPA 491
P+S G P + P T A SR P+PS A
Sbjct: 90 PSSRGAPTMCSSPPTQSAAPPGSRCSPSPSPTA 122
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -3
Query: 227 GASGEDVSCAKSEGELTSLGSPGPPAMSXXXXXXXXXXGTPQMEVLPFVSAITSPARWG* 48
G+ G C + +T +G+P PP+ + P + P VS+ +P
Sbjct: 595 GSRGRGRGCGLTPAVVT-VGAPPPPSAAPAPAPASAPSLEPNDIIAPVVSSTLAPG---- 649
Query: 47 APALAAEPPTILVPS 3
A A AA P + P+
Sbjct: 650 ASAAAAAAPAVAPPA 664
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 9 YQDCGWFCRQRWCSPPSCWTCDR 77
Y++ GW+ Q W PP DR
Sbjct: 128 YEETGWYDGQMWVKPPEVLARDR 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,446,092
Number of Sequences: 37544
Number of extensions: 355638
Number of successful extensions: 1790
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1789
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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