Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0553
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    30   1.5  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   1.9  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   1.9  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   1.9  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   1.9  
U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U28738-6|AAT92056.1|  274|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   3.3  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical pr...    27   7.7  
L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    27   7.7  
AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical...    27   7.7  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    27   7.7  
AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered cu...    27   7.7  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 511 IASTLCVDGSNGR-STCSGDSGGPLTIGNGG 600
           + S LC   S G+  +C GDSGGPL     G
Sbjct: 221 LPSMLCAGYSYGKIDSCQGDSGGPLMCARDG 251


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 236 GDPGASGEDVSCAKSEGELTSLGSPGPP 153
           G+PGA G+D    K +GE    G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 251 DDGSYN-----MDTLHNDVAIINHNHVGFTNNIQRINLASGSNN 367
           +DG YN         HN++A+ N   +  ++ +QRINL    NN
Sbjct: 188 NDGIYNEIARIKQLTHNEIALKNERSLNVSDLLQRINLLQTENN 231


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 251 DDGSYN-----MDTLHNDVAIINHNHVGFTNNIQRINLASGSNN 367
           +DG YN         HN++A+ N   +  ++ +QRINL    NN
Sbjct: 814 NDGIYNEIARIKQLTHNEIALKNERSLNVSDLLQRINLLQTENN 857


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 251 DDGSYN-----MDTLHNDVAIINHNHVGFTNNIQRINLASGSNN 367
           +DG YN         HN++A+ N   +  ++ +QRINL    NN
Sbjct: 814 NDGIYNEIARIKQLTHNEIALKNERSLNVSDLLQRINLLQTENN 857


>U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical
           protein T28D9.3a protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +1

Query: 466 HYQRRLRPHVWKQCVIASTLCVDGSNGR----STCSG 564
           H   RLRPH    C +A+  CV G + R     TC+G
Sbjct: 145 HVVGRLRPHFLDVCKLANDTCVTGDSHRYITDYTCTG 181


>U28738-6|AAT92056.1|  274|Caenorhabditis elegans Hypothetical
           protein T28D9.3c protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +1

Query: 466 HYQRRLRPHVWKQCVIASTLCVDGSNGR----STCSG 564
           H   RLRPH    C +A+  CV G + R     TC+G
Sbjct: 146 HVVGRLRPHFLDVCKLANDTCVTGDSHRYITDYTCTG 182


>U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical
           protein T28D9.3b protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = +1

Query: 466 HYQRRLRPHVWKQCVIASTLCVDGSNGR----STCSG 564
           H   RLRPH    C +A+  CV G + R     TC+G
Sbjct: 146 HVVGRLRPHFLDVCKLANDTCVTGDSHRYITDYTCTG 182


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 496 WKQCVIASTLCVDGSNGRSTCSGDSGGPLT 585
           W   +   + C      ++ CSGDSGG LT
Sbjct: 250 WGTSIPFDSFCTAEEEDKNVCSGDSGGGLT 279


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 236 GDPGASGEDVSCAKSEGELTSLGSPGPP 153
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 236 GDPGASGEDVSCAKSEGELTSLGSPGPP 153
           G+PGA G+    A S GE    G PGPP
Sbjct: 122 GNPGADGD----AGSPGEAGGAGPPGPP 145


>Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 3   RRYQDCGWFCRQRWCSPPSCWTCDRTDEWQNFHLR 107
           +R  DC W C +R  SPPS +    +D   +  LR
Sbjct: 101 KRVGDCMWIC-ERAASPPSSFDSSSSDSDDDSFLR 134


>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 236 GDPGASGEDVSCAKSEGELTSLGSPGPP 153
           G+PGA G+      + G   + G PGPP
Sbjct: 219 GNPGAPGQVTETPGTPGPAGAAGPPGPP 246


>AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 3   RRYQDCGWFCRQRWCSPPSCWTCDRTDEWQNFHLR 107
           +R  DC W C +R  SPPS +    +D   +  LR
Sbjct: 101 KRVGDCMWIC-ERAASPPSSFDSSSSDSDDDSFLR 134


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 236 GDPGASGEDVSCAKSEGELTSLGSPGPP 153
           G+PGA G+      + G   + G PGPP
Sbjct: 229 GNPGAPGQVTETPGTPGPAGAAGPPGPP 256


>AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered
           cuticle protein 2 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 236 GDPGASGEDVSCAKSEGELTSLGSPGPPAM 147
           G PG +GE   C +        GSPGPP +
Sbjct: 218 GQPGDNGEPGKCDEVNVAQGPPGSPGPPGL 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,896,948
Number of Sequences: 27780
Number of extensions: 248601
Number of successful extensions: 1168
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)