Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0553
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co...    28   4.1  
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    28   4.1  
At1g10750.1 68414.m01229 expressed protein similar to gi 3128199...    28   4.1  
At5g67370.1 68418.m08495 expressed protein similar to unknown pr...    27   7.2  
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co...    27   7.2  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    27   7.2  

>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 301

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 385 LGCRLRKDLRCCFGSQQPTKTPSEPPGHYQRRLRPHVWKQCVIASTL 525
           L C   KDLR CF    P   P  PP      L   +   CV+ S +
Sbjct: 10  LSCLQFKDLRFCFRQYPPPPPPPPPPRELSLLLPTSI---CVVGSII 53


>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 965

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = +1

Query: 349 SQWKQQLCWYLGLGCRLRKDLRCCFGSQQPTKTPSEPPGHYQRRLRPHVWKQCVIASTLC 528
           S++    C  L +  RL  ++   FG     K+   PP      + P+ W+ C +     
Sbjct: 551 SEFMVNECNSLSIWVRLY-EVTGVFGFVHYVKSVYSPPDG----ISPNTWRDCWVVRAPG 605

Query: 529 VDGSNGRSTCSGDSGGPLTIG 591
            DG +GR   +  +G  L  G
Sbjct: 606 ADGCSGRYVVAASAGNTLESG 626


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 72  HKSSKMGVSTSVGGRTTHNP 13
           HK+  MG STS+ G T+H+P
Sbjct: 294 HKTKDMGNSTSLRGSTSHSP 313


>At1g10750.1 68414.m01229 expressed protein similar to gi 3128199
           F4I1.5 putative proteinase from Arabidopsis thaliana BAC
           gb AC004521
          Length = 467

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 430 QQPTKTPSEPPGHYQRRLRPHVWKQCVIASTLCVDGS 540
           Q+P   P  P GH +R LRP  ++   +    C +G+
Sbjct: 147 QKPLDPPERPRGHNRRGLRPKSFQLWGMEGETCPEGT 183


>At5g67370.1 68418.m08495 expressed protein similar to unknown
           protein (gb|AAC18972.1)
          Length = 327

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 9   YQDCGWFCRQRWCSPPSCWTCDR 77
           Y++ GW+  Q W  PP     DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207


>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 1087

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 481 LRPHVWKQCVIASTLCVDGSNGRSTCSGDSGGPLTIG 591
           + P+ W+ C +      DG +GR   +  +G  L  G
Sbjct: 563 ISPNTWRDCWVVRAPGADGCSGRYVVAASAGNTLESG 599


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 599 PPLPMVRGPPESPLQVLRPLEPS 531
           PP P + GPP + + V  P EPS
Sbjct: 77  PPSPSLTGPPPTTIPVSPPPEPS 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,470,526
Number of Sequences: 28952
Number of extensions: 230493
Number of successful extensions: 906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)