Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0552
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   1.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.1  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   7.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.1  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 457 TRCAVDVDVPYNFFKYITYV*LL*FSRNSIFFPHVLI 347
           T C V ++ PY FF  + Y  ++  + N +F+ + LI
Sbjct: 21  TVCLVPLN-PYQFFLAVQYPRIVVSTFNIVFYMYTLI 56


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 560 GI*GSRVSICRTPARCKTLKMYAHDRCKHVML 655
           G+ GS V I + PA+     +Y +D   HVML
Sbjct: 254 GLYGS-VVIRQPPAKDPNSHLYDYDLTTHVML 284


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 560 GI*GSRVSICRTPARCKTLKMYAHDRCKHVML 655
           G+ GS V I + PA+     +Y +D   HVML
Sbjct: 254 GLYGS-VVIRQPPAKDPNSHLYDYDLTTHVML 284


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 136 NNSNIHTFTCMTCSF 180
           ++SN++ ++C  CS+
Sbjct: 280 SHSNVYRYSCRDCSY 294


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 136 NNSNIHTFTCMTCSF 180
           ++SN++ ++C  CS+
Sbjct: 38  SHSNVYRYSCRDCSY 52


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 151  VCWNY*LNC 125
            +CWN  LNC
Sbjct: 1123 ICWNVLLNC 1131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,427
Number of Sequences: 336
Number of extensions: 3869
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)