Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0552
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   4.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.7  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 474 FFITIQYMDVSVRCRFELETFEISILVHEAFEGLVSQYVEPL 599
           F  +I ++ +   C+F +ETF ++  +HE+   +  Q +  L
Sbjct: 195 FRSSIDFIVIESICKFSIETFRLTDRLHESNRHINDQLIRLL 236


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -3

Query: 474 KINATLQDAPLMSMYPTIFLNT*HTCNYCSFHVTRFFFRMFSSDSKCFRDIETEIVHNYG 295
           ++   ++D P ++     FL T     + S  ++ F FR  SS        E EI     
Sbjct: 479 ELGRMIEDLPFLNSLLRTFLPTLVYSLFIS--ISPFLFRWLSSMQGLSSRAEEEIYAVGK 536

Query: 294 NYIYVFVKLKL 262
           NY Y+FV   L
Sbjct: 537 NYAYLFVNFFL 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,426
Number of Sequences: 5004
Number of extensions: 57513
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)