Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0552
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280...    29   4.5  

>06_03_0522 -
           21726317-21726634,21727202-21727654,21727771-21728025,
           21728109-21728249,21728404-21728565,21728660-21728820,
           21731598-21731733
          Length = 541

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 402 TCNYCSFH--VTRFFFRMF--SSDSKCFRDIETEIVHNYGNYIYVFVK 271
           T +YC FH  V R+       +S  K FRDI   ++HN  +  +  VK
Sbjct: 129 TSDYCDFHKMVKRYVMSSMLGTSAQKQFRDIRDMMIHNMLSTFHKLVK 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,046,976
Number of Sequences: 37544
Number of extensions: 305251
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)