Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0552
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    32   0.33 
Z70751-1|CAA94751.1|  544|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 17/86 (19%), Positives = 41/86 (47%)
 Frame = +3

Query: 399 TYVMYLKKL*GTSTSTAHLVMWHLFFFITIQYMDVSVRCRFELETFEISILVHEAFEGLV 578
           T + YL      ++  A+  +   +  + + Y  +SV       + E S +V + +EG V
Sbjct: 21  TMLFYLLTFKANTSYGAYRRLMFSYTIVELMYSVISVMSGMMAHSTETSFVVFDLYEGYV 80

Query: 579 SQYVEPLRVVKH*KCTLTIVVNMLCY 656
           S+Y+ P+ ++       T+++ ++ +
Sbjct: 81  SRYLAPIFLIDFCAFYFTLILLLVVH 106


>Z70751-1|CAA94751.1|  544|Caenorhabditis elegans Hypothetical
           protein F11A3.1 protein.
          Length = 544

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 641 YNDRERTFLVFYNAQGFDILRHETLK 564
           YN++   FL FY+  GF +L H  LK
Sbjct: 234 YNEKALLFLPFYHVYGFGLLNHCLLK 259


>Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical
           protein F53H2.3 protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 643 FTTIVSVHF*CFTTRRGSTY*DTRPSNASWTRIEISKVSNS 521
           F     +HF C  +    ++ D  PS+  WT+ +++ +S S
Sbjct: 54  FKAFAILHFSCLLSESAQSHRDHGPSSIHWTKGQLTSISYS 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,165
Number of Sequences: 27780
Number of extensions: 333824
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)