Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0552
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   8.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 463 GIYFFSLPFNTWMCLSAVGS 522
           G+ F + PFN W   + +GS
Sbjct: 287 GLEFTAAPFNGWYMSTEIGS 306


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 351 SSDSKCFRDIETEIVHNYGNYIYVFVKLKL*FNRTSCNDRITNK 220
           S + K    +  + +HN  NY Y +   K  +N  + N ++  K
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNY-NNKYNYNNNNYNKKLYYK 118


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/56 (21%), Positives = 23/56 (41%)
 Frame = -3

Query: 351 SSDSKCFRDIETEIVHNYGNYIYVFVKLKL*FNRTSCNDRITNK*SNLSFCFLIIK 184
           S + K    +  + +HN  NY Y +      +N  + N+   N    L +  + I+
Sbjct: 309 SREPKIISSLSNKTIHNNNNYKYNYNNNN--YNNNNYNNNYNNNCKKLYYNIINIE 362


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 263 YNLTERLATTESLTNNRICHFV 198
           YNL  +L+T E    N+  H++
Sbjct: 557 YNLLGKLSTIEDADKNQCRHYL 578


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 384 NYNNYTYVMYLKKL 425
           NYNN  Y  Y KKL
Sbjct: 332 NYNNNNYNNYNKKL 345


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 351 SSDSKCFRDIETEIVHNYGNY 289
           S +SK    +  + +HN  NY
Sbjct: 309 SKESKIISSLSNKTIHNNNNY 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,257
Number of Sequences: 438
Number of extensions: 4143
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)