Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0551
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    30   1.2  
10_01_0042 + 562246-563550                                             29   2.7  
09_06_0322 - 22329897-22330078,22330569-22331928                       28   6.3  
08_01_0084 - 613255-613989                                             27   8.4  
08_01_0082 - 588269-588434,590800-591653                               27   8.4  

>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 89  RQDRIRMGSRRRTVPLPAVTAHGEP*GSSQRLWSH 193
           R+  +R+  RRR  PLPA  A   P   S ++WS+
Sbjct: 5   RESLVRLIGRRRRSPLPAALALAVPPSRSLQVWSN 39


>10_01_0042 + 562246-563550
          Length = 434

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 298 NNGGPCHVDCTGSDDMVTRVAVQ*AAVSPESLWMMVAPQA 179
           ++GG  ++DCTG D  VT VA   A  + E L  +V  QA
Sbjct: 81  DDGGHFYIDCTGEDLGVTFVAAS-ANCTMEELMCLVDDQA 119


>09_06_0322 - 22329897-22330078,22330569-22331928
          Length = 513

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 188 SHHHPQRFGTHGCSLHCYSRNHIIRAGTVNMTRPAVVFETTDYLNH 325
           +HHHP     H        +++I+ A +VN  RP   ++   Y +H
Sbjct: 165 THHHPYALRPHNPLSSSSKQHYIVTAFSVNRYRPPGEYKLHLYHSH 210


>08_01_0084 - 613255-613989
          Length = 244

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/87 (20%), Positives = 33/87 (37%)
 Frame = +1

Query: 286 ARRCFRDDRLFKPPTLRRIDTADCTTSRHRPHQVWTLPRF**LRPTDKATKXXXXXXXXX 465
           A RC  +   F       +  +D  +S + P +VW+   +  +   D AT+         
Sbjct: 108 ALRCTGEGAEFVHAAAPGVAVSDVVSSLYTPPEVWSFYSYNLVLGADAATESRPVLSVQV 167

Query: 466 XXXSDCHRLGKNLDHGTAPENMNWVFL 546
              +D   +G +L+H        W F+
Sbjct: 168 TELADGVFVGMSLNHSVGDGTTFWKFM 194


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/87 (20%), Positives = 33/87 (37%)
 Frame = +1

Query: 286 ARRCFRDDRLFKPPTLRRIDTADCTTSRHRPHQVWTLPRF**LRPTDKATKXXXXXXXXX 465
           A RC  +   F       +  +D  +S + P +VW+   +  +   D AT+         
Sbjct: 110 ALRCTGEGAEFVHAAAPGVAVSDVVSSLYTPPEVWSFYSYNLVLGADAATESRPVLSTQV 169

Query: 466 XXXSDCHRLGKNLDHGTAPENMNWVFL 546
              +D   +G +L+H        W F+
Sbjct: 170 TELADGVFVGMSLNHSVGDGTTFWKFM 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,012
Number of Sequences: 37544
Number of extensions: 360803
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)