Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0550
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   5.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   5.8  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    24   7.7  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    24   7.7  

>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 143 RTRITHSSVPICILFWQMCNEHKILKFL*LVLNGKSWYL 259
           R  + ++  P+C+ F +  +   IL  L   LN   W L
Sbjct: 609 RRSLLNALAPLCVFFGKAKSNDLILSHLITYLNDTDWML 647


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 164 SVPICILFWQMCNEHKILKFL*LVLNGKSWYLVRNVTILGALTICIHVFILXIKRIIMYY 343
           S P  I+ + M +  +  K L  V + KS+ +V  + ++       H FIL   R  ++Y
Sbjct: 270 SFPSYIIKYLMSHSRRS-KLLSAVFSKKSFLIVSVLLLIAHFNTIFHPFILADNRHYLFY 328

Query: 344 L 346
           +
Sbjct: 329 V 329


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 138 ICLKGLPMAHI 106
           +C KGLP+AHI
Sbjct: 234 VCAKGLPVAHI 244


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 14  LSPKRAKPYDRLCYSTDNETFNTYFFETP 100
           ++P+   P+D    S D E  +TY  + P
Sbjct: 73  INPQYVNPFDTSPVSVDTEFQDTYLLDAP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,551
Number of Sequences: 5004
Number of extensions: 32321
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)