Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0550
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0267 + 18970578-18972464                                         28   3.2  
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225...    27   7.3  
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434...    27   7.3  
05_02_0112 + 6739727-6739958,6740048-6740263,6740349-6740774,674...    26   9.7  
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163     26   9.7  

>06_03_0267 + 18970578-18972464
          Length = 628

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 207 CSLHICQKSIHMGTEECV 154
           CS   C KS+H GTE CV
Sbjct: 424 CSAEGCPKSVHGGTEFCV 441


>07_03_0961 -
           22921761-22921850,22922204-22922338,22922409-22922531,
           22922621-22922707,22922780-22922831,22922939-22923063,
           22923724-22923932,22924206-22924407,22924526-22924630,
           22925353-22925414,22925755-22925944,22926017-22926112,
           22926203-22926305,22927019-22927122,22927264-22927395,
           22928257-22928343,22929121-22929206,22929291-22929383,
           22932197-22932284,22932402-22932514,22932621-22932743,
           22934153-22934204,22934365-22934408,22934498-22934571,
           22934655-22934746,22935594-22935661,22937146-22937221,
           22937323-22937679
          Length = 1055

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 3   VNYDCLQSARNHMTAFVIVPIMKP 74
           VN DCL  A +    F I P+M P
Sbjct: 187 VNNDCLDDALDRFAQFFINPLMSP 210


>07_01_0584 +
           4345134-4345237,4346165-4346267,4346397-4346466,
           4346552-4346590,4346684-4346801,4346894-4346951,
           4347031-4347095,4347281-4347341,4347678-4347779,
           4348005-4348070,4348399-4348443,4348540-4348797,
           4349289-4349501,4350103-4350411,4350461-4350613
          Length = 587

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 225 RNFKILCSLHICQKSIHMGTEECVMRVLFICLKGLP 118
           R    LC +H    +++MG   C   ++F CL  LP
Sbjct: 525 RQVSSLCEVH----NMNMGDPNCCCAIIFSCLLALP 556


>05_02_0112 +
           6739727-6739958,6740048-6740263,6740349-6740774,
           6740992-6741080,6741259-6741387,6741788-6742018
          Length = 440

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 23  KRAKPYDRLCYSTDNETFNTYFFETPYGICAIGRPFKQMNRTRITHSSVPI 175
           +R  P  R+ Y+ D  T    F  TP+     GRP    N T  +H +VPI
Sbjct: 264 QRRHPDSRIVYA-DYYTPYIQFARTPH---LYGRPATDTNLTVTSHKTVPI 310


>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
          Length = 723

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 195 ICQKSIHMGTEECV 154
           +C KS+H GTE CV
Sbjct: 513 VCPKSVHGGTEYCV 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,040,448
Number of Sequences: 37544
Number of extensions: 169404
Number of successful extensions: 391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)