Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0550
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48770| Best HMM Match : Peptidase_C1 (HMM E-Value=1.9e-14)          29   1.4  
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     28   2.5  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_59652| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_35357| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_29710| Best HMM Match : LHC (HMM E-Value=3.3)                       27   7.6  
SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17)          27   7.6  
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_48770| Best HMM Match : Peptidase_C1 (HMM E-Value=1.9e-14)
          Length = 183

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 35  PYDRLCYSTDNETFNTYFFETPYGICAIG-RPFKQMNRTR 151
           PY  +  S  N+  N  F +   G+C IG RPF  +N++R
Sbjct: 111 PYWLIKNSWSNKWGNNGFIKIKQGLCGIGKRPFVVLNKSR 150


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 161 NVLCEFYSSV*RVCLWHIYHRVFQKNTY*RFHYRYYNKGGHMVSRAL 21
           N+    YS++ R  L+H  +R    N Y   H+  Y    H + RAL
Sbjct: 26  NIYRALYSNIYRA-LYHNIYRALYSNIYRALHHNIYRALYHNIYRAL 71


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 35   PYDRLCYSTDNETFNTYFFETPYGICAIGRPFKQMNRTRITHSSVPI 175
            P  +LC S     F  +  ++    C  GRP K  NR  +   S+P+
Sbjct: 4828 PAQKLCNSIPGALFPIWIGDSCDVRCVFGRPHKS-NRNMLVRPSMPV 4873


>SB_59652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 23 KRAKPYDRLCYSTDNETFNTYFFET 97
          K ++  D +C  T+ +TFN  FFE+
Sbjct: 7  KFSRSLDTVCPDTEQDTFNDAFFES 31


>SB_35357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 119 LWHIYHRVFQKNTY*RFHYRYYNKGGHMVSRALET 15
           L +++  VF  + Y +FH  YYN+   +V+  + T
Sbjct: 150 LHYVFELVFLVDIYIKFHVGYYNENKVLVTHPIFT 184


>SB_29710| Best HMM Match : LHC (HMM E-Value=3.3)
          Length = 343

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = +2

Query: 47  LCYSTDNETFNTYFFETPYGICAIGRPF--KQMNRTRITHSSVPICILFWQMCNEHKILK 220
           LCY T  +  N YF   P    +  R +  K +N+ +     + I    W + N   + K
Sbjct: 238 LCYHTQTDEHNLYFRPDPKSNSSGSRVWIMKHVNQWQCNELGMSIEDWGWHLTNGQVLPK 297

Query: 221 FL*LVLNGKSWYLVRNVTILGALTI 295
              L L  ++   +  V + G + +
Sbjct: 298 LTDLQLEPQNLLKMEQVQLAGVIAL 322


>SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17)
          Length = 380

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 119 LWHIYHRVFQKNTY*RFHYRYYNKGGHMVSRALET 15
           L +++  VF  + Y +FH  YYN+   +V+  + T
Sbjct: 340 LHYVFELVFLVDIYIKFHVGYYNENKVLVTHPIFT 374


>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -3

Query: 248 ICHLGRVTEISKFYVRYTFARKVYIWGRKNVLCEFYS 138
           +CH      + KF+    F +++  +G++N+ C + S
Sbjct: 740 LCHNYECERLQKFFHHTVFTQQMERYGQENIECSYES 776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,145,053
Number of Sequences: 59808
Number of extensions: 226388
Number of successful extensions: 457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)