Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0550
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    28   2.9  
Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.      27   6.7  
AF039716-8|AAB96738.1|  384|Caenorhabditis elegans Paf-acetylhyd...    27   6.7  
AC006670-3|ABC71823.1|  350|Caenorhabditis elegans Patched relat...    27   6.7  
AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched relat...    27   6.7  

>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 294 IVKAPRIVTFLTKYQDLPFRTSYRNFKILCSLHI 193
           I+K P ++ FL +Y        YR F + C+LHI
Sbjct: 81  IIKHPNLIEFLYRYP------KYRYFSVWCTLHI 108


>Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical
           protein F16D3.1 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 14  LSPKRAKPYDRLCYSTDNETFNTYFFETPYG 106
           ++P    P D   Y  +++++NT+F ETP G
Sbjct: 30  ITPDGLMP-DDTSYGVEDQSYNTFFSETPSG 59


>AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 211 NFEISVTRPKWQILVFSKKRNYSRSFDDLY 300
           N ++S    KW +LVFS     SR+F   Y
Sbjct: 96  NAQLSTKSDKWPVLVFSHGLGGSRTFYSTY 125


>AF039716-8|AAB96738.1|  384|Caenorhabditis elegans
           Paf-acetylhydrolase protein 1 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 211 NFEISVTRPKWQILVFSKKRNYSRSFDDLY 300
           N ++S    KW +LVFS     SR+F   Y
Sbjct: 96  NAQLSTKSDKWPVLVFSHGLGGSRTFYSTY 125


>AC006670-3|ABC71823.1|  350|Caenorhabditis elegans Patched related
           family protein12, isoform b protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 272 LRFLLNTKICHLGRVTEISKFYVRYTFARKVYIWGRKNVLCEFYSSV*RVCLWHIYHRV 96
           L+  ++T +C L    + S  Y+   F + +       +LC F++ V   CL+ I+HR+
Sbjct: 282 LQATVSTSLCVLS--LKFSSIYMSCAFVKTMITC---MILCVFHALVLLPCLFAIFHRI 335


>AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched related
           family protein12, isoform a protein.
          Length = 901

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 272 LRFLLNTKICHLGRVTEISKFYVRYTFARKVYIWGRKNVLCEFYSSV*RVCLWHIYHRV 96
           L+  ++T +C L    + S  Y+   F + +       +LC F++ V   CL+ I+HR+
Sbjct: 833 LQATVSTSLCVLS--LKFSSIYMSCAFVKTMITC---MILCVFHALVLLPCLFAIFHRI 886


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,395,550
Number of Sequences: 27780
Number of extensions: 175070
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)