Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0550
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   6.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   6.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    20   9.2  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 240 FRTSYRNFKILCSLH 196
           FR+S RN+K L S H
Sbjct: 44  FRSSLRNYKTLISSH 58


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 211 NFEISVTRPKWQILVFSKKRNYSRSFDDLYP 303
           NF I ++ P  +I  +        SF  LYP
Sbjct: 367 NFNIIISEPTERISPYGYPIGSGGSFPSLYP 397


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 272 TILGALTICIHVFILXIKRIIMYYL 346
           T++G + +C+ VF++   R    YL
Sbjct: 55  TVIGNILVCVAVFLVRKLRRPCNYL 79


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 72  PLIRIFLKHPMVYVP*ADPSNR*IEL 149
           PL+RIF KH +  V       R I L
Sbjct: 228 PLLRIFTKHMLDVVSGTQKKKRKIYL 253


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 72  PLIRIFLKHPMVYVP*ADPSNR*IEL 149
           PL+RIF KH +  V       R I L
Sbjct: 243 PLLRIFTKHMLDVVSGTQKKKRKIYL 268


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 179 ILFWQMCNEHKILKF 223
           ILFW +C  H  L +
Sbjct: 781 ILFWYLCAGHVRLPY 795


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 179 ILFWQMCNEHKILKF 223
           ILFW +C  H  L +
Sbjct: 819 ILFWYLCAGHVRLPY 833


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 340 VHNNSLYXQYKN 305
           +HNN+ Y  Y N
Sbjct: 312 IHNNNNYNNYNN 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,376
Number of Sequences: 438
Number of extensions: 2351
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)