Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0549
         (345 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   2.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   2.7  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   2.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   6.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   6.2  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    20   6.2  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    20   6.2  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    20   8.2  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 164 SRGHQPGPNRRRICYQSRRDHDPCTV 87
           S+  + G N   + Y S   HD CTV
Sbjct: 129 SQADRDGKNYPAVPYGSGDFHDSCTV 154


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 164 SRGHQPGPNRRRICYQSRRDHDPCTV 87
           S+  + G N   + Y S   HD CTV
Sbjct: 130 SQADRDGKNYPAVPYGSGDFHDSCTV 155


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 164 SRGHQPGPNRRRICYQSRRDHDPCTV 87
           S+  + G N   + Y S   HD CTV
Sbjct: 130 SQADRDGKNYPAVPYGSGDFHDSCTV 155


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 204 FWKKAGAPKS 175
           FW K G PKS
Sbjct: 402 FWTKKGFPKS 411


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 152 GGRDYDNTDLGAPAFFQNA 208
           GGRD    D G    F NA
Sbjct: 553 GGRDIRGDDFGRGQDFSNA 571


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 125 KFCAGLVRAGGRDYDN 172
           K  AG    GG D+DN
Sbjct: 48  KATAGDTHLGGEDFDN 63


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 125 KFCAGLVRAGGRDYDN 172
           K  AG    GG D+DN
Sbjct: 48  KATAGDTHLGGEDFDN 63


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 41  LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVR 148
           LH + L+       + +YK  ++ +  +K   GL+R
Sbjct: 119 LHTIFLVCNVLTVFKIRYKDLNKALESSKISVGLIR 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,707
Number of Sequences: 336
Number of extensions: 1824
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)