Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0549
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.1  
SPAC22G7.11c ||SPAC4G8.01c|conserved fungal protein|Schizosaccha...    24   5.8  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    24   7.6  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    24   7.6  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 209 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 102
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPAC22G7.11c ||SPAC4G8.01c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 41  LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLG 184
           LH   +    KE   +  + H        + A   +AGGRD D  DLG
Sbjct: 15  LHNPNVSQQAKERAEDYIESHSSGQETGDYSA---QAGGRDLDYEDLG 59


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -2

Query: 167 RSRGHQPGPNRRRICYQSRRDHDPCTVPCS 78
           R  G QP P RR +    RR  DP  V  S
Sbjct: 164 RLHGIQPPPKRRTLSPPPRRLADPVVVGSS 193


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 127 FVISHDAIMTLVLFPAVFFV 68
           ++++H  I+TL+  P VF +
Sbjct: 67  YLVTHKVILTLIAVPVVFAI 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,690
Number of Sequences: 5004
Number of extensions: 28384
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)