Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0549
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 29 0.74
01_06_1518 + 37925609-37925871,37925954-37926554 28 1.7
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 27 3.0
01_01_0347 + 2765517-2767109,2767214-2767228 27 3.0
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996... 27 5.2
01_06_0128 - 26727484-26728383 27 5.2
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 26 6.9
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 26 6.9
01_06_1292 - 36037741-36039306 26 6.9
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 26 9.1
05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246... 26 9.1
02_05_0310 + 27769988-27770830 26 9.1
02_01_0616 + 4616936-4617307,4618723-4618809,4619322-4619384,461... 26 9.1
01_06_1432 + 37327775-37327940,37328025-37328362,37328843-37329109 26 9.1
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 26 9.1
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 29.5 bits (63), Expect = 0.74
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 197 RRQGHPSQYCRSRGHQPGPNRR 132
RR+ H ++ R RG QP PNRR
Sbjct: 27 RRRRHHQRHRRRRGGQPAPNRR 48
>01_06_1518 + 37925609-37925871,37925954-37926554
Length = 287
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = -2
Query: 266 STTGRCHWHCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPGP 141
STT H H QK CL H G R G C + P P
Sbjct: 231 STTASRHHHHQQQKTICLCYHLGVRNG---DVCSCKAAAPSP 269
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 75 SLLVTMSSSLWRLPSDTLPP 16
SL T+SS+L R+PS +LPP
Sbjct: 394 SLTNTLSSTLQRVPSSSLPP 413
>01_01_0347 + 2765517-2767109,2767214-2767228
Length = 535
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 297 DPFSERTDAGEYYGEMSLALLFPKDTMPTSAFWKKAGAPKSVL 169
DPF E GE+ E+ LA P+D A++ + G ++
Sbjct: 476 DPFPEHCPPGEFVREIPLATRIPEDA-KLEAYYDETGTGLEIM 517
>12_01_1019 -
10398880-10399314,10399401-10399481,10399560-10399652,
10399784-10399999,10403837-10403935,10404244-10404867,
10404946-10405033,10405167-10405430,10406437-10406504
Length = 655
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 173 YCRSRGHQPGPNRR 132
Y R RGH P PNRR
Sbjct: 545 YIRGRGHGPKPNRR 558
>01_06_0128 - 26727484-26728383
Length = 299
Score = 26.6 bits (56), Expect = 5.2
Identities = 20/70 (28%), Positives = 26/70 (37%)
Frame = -1
Query: 291 FSERTDAGEYYGEMSLALLFPKDTMPTSAFWKKAGAPKSVLS*SRPPARTKPAQNLLSVT 112
F +A Y ++ L P T SA AGA V A + PA + +
Sbjct: 132 FDTAEEAARVYDNAAIQLRGPSATTNFSASTNSAGAQDPVAVGYESGAESSPAVSSPTSV 191
Query: 111 TRS*PLYCSL 82
R P CSL
Sbjct: 192 LRKVPSLCSL 201
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 26.2 bits (55), Expect = 6.9
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +1
Query: 37 QPPQARTHCDQQRKLQG 87
+PP R HC+++R+++G
Sbjct: 102 RPPPTRRHCEREREMRG 118
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 179 SQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPCS 78
SQ R RG G NRR + ++ R + TV C+
Sbjct: 591 SQLVRVRGRCTGDNRRIVQFRMERGLENWTVDCT 624
>01_06_1292 - 36037741-36039306
Length = 521
Score = 26.2 bits (55), Expect = 6.9
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -1
Query: 297 DPFSERTDAGEYYGEMSLALLFPKDTMPTSAFWKKAGAPKSVLS*SRPPARTKPAQNLLS 118
DP E GE+ E+ LA P+D A++ +A A VL P +P ++ +
Sbjct: 450 DPMPEHCPHGEFVREIPLATRIPEDA-KLEAYFDEAAA---VLEIMVPKRGNEPEEHEVR 505
Query: 117 VTTR 106
V+ R
Sbjct: 506 VSMR 509
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 25.8 bits (54), Expect = 9.1
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -2
Query: 299 RIHSVKELMLVSTTGRCHWH-CSFQKIRCLLAHFGRRQGH-PSQYCRSRGHQPGPNR 135
R H V E+ S H H + +RC L R H S+ CR RG P P+R
Sbjct: 138 RRHGVGEVGAASRVISPHLHDVVLRPLRCRLHALWRCFFHWRSRCCRHRGLSPPPSR 194
>05_01_0313 -
2461487-2461861,2461929-2462513,2462819-2464154,
2464231-2464338,2464421-2464743
Length = 908
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 79 VFFVGHNEFELVEVAVRYTAALNGSS 2
VFF+GHN + EVAV Y +G S
Sbjct: 794 VFFLGHNLHRIAEVAV-YKMDFSGPS 818
>02_05_0310 + 27769988-27770830
Length = 280
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 132 APVWSGLVAATTTILTWVPLPSSKMR**ASYLLERAMPMTSPRSTH 269
A +W G+ AAT +++ P S R + P T PR H
Sbjct: 227 AEIWDGVFAATASLVHHHHPPPSSRREPVAPAARPPAPRTPPRHRH 272
>02_01_0616 +
4616936-4617307,4618723-4618809,4619322-4619384,
4619478-4619537,4619570-4619602,4621584-4621751
Length = 260
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/35 (25%), Positives = 15/35 (42%)
Frame = -2
Query: 188 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTVP 84
G +C GH+P P ++ R+ P + P
Sbjct: 105 GEDGAFCSPPGHRPAPATTKVSAMGRQQQLPFSAP 139
>01_06_1432 + 37327775-37327940,37328025-37328362,37328843-37329109
Length = 256
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 231 PKDTMPTSAFWKKAGAPKSVLS*SRPPARTK 139
P T P S +WK AG P V S R P K
Sbjct: 88 PSRTTP-SGYWKAAGTPGVVYSADRRPIGMK 117
>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -3
Query: 253 DVIGIALSKRYDAY*RILEEGRGTQVSIVVVAATSPDQTGAEFVISHDAIMTLV--LFPA 80
D+ L + D Y +L G GT+ +IV PD+ ++ + D++ TL+ +FP+
Sbjct: 1380 DISDYGLPELTDTY-YLLRIGNGTKNTIVDDYVRLPDEIVIGYLDNEDSVNTLIEYVFPS 1438
Query: 79 V 77
+
Sbjct: 1439 L 1439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,043,019
Number of Sequences: 37544
Number of extensions: 213949
Number of successful extensions: 592
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -