Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0549
(345 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 33 0.047
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.19
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.33
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 30 0.44
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0) 29 1.0
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 29 1.3
SB_29023| Best HMM Match : Pentaxin (HMM E-Value=2.9e-11) 29 1.3
SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14) 28 2.3
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 27 3.1
SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 27 5.4
SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 26 7.1
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 26 7.1
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_1423| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32) 26 9.4
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 33.5 bits (73), Expect = 0.047
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 41 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNAL 211
LH+ + + + + CR+ + D +VT N FCAG + D D G P N L
Sbjct: 266 LHEATVPIVDIQTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDSGGPFSVDNPL 320
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 31.5 bits (68), Expect = 0.19
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 GTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDL 181
G+T+ G+ S L + L + + +C+ +Y G V + CAG R+G N D
Sbjct: 211 GSTIGTGN-SPRILQQAMLPIASHNDCKNKYYG---VSSTAHLCAGEARSGASGGCNGDS 266
Query: 182 GAPAFFQN----ALVGIVSFGK 235
G P ++ L G VS+GK
Sbjct: 267 GGPLVCEDNGRWYLHGAVSYGK 288
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 30.7 bits (66), Expect = 0.33
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 194 RQGHPSQYCRSRGHQPGPNRR--RICYQSRRD 105
RQG P +YCRS Q GP RR R Y +R+
Sbjct: 338 RQGTPDEYCRSSVKQIGPFRRFERRGYSKKRN 369
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 215 LLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 87
L+ H G R +PS+ C + P +++ YQS+ HD C +
Sbjct: 162 LICH-GCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203
>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 347
Score = 29.1 bits (62), Expect = 1.0
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 41 LHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA---- 208
LH+ + + +++ C++ Y V+ CAG AGG D D G P +
Sbjct: 252 LHQAAVPLVSRDTCQKAYNDLHYKVSSRMRCAG-YGAGGIDACQGDSGGPLVCKEGDVWY 310
Query: 209 LVGIVSFG 232
L+G +S+G
Sbjct: 311 LMGAISWG 318
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 62 VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA 208
V N C++ Y+ VT N CAG + RD N D G F ++
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSGGGFVFYDS 1368
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 29.1 bits (62), Expect = 1.0
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +2
Query: 29 SDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA 208
+ G L + L + CR+QY+ DR CAG R G N D G P + +
Sbjct: 632 TQGTLQQAMLPIAEHSLCRKQYRV-DRTAHP---CAGEARVGAAGGCNGDSGGPLVCEQS 687
Query: 209 ----LVGIVSFG 232
L G VS+G
Sbjct: 688 GVWVLHGAVSYG 699
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 28.7 bits (61), Expect = 1.3
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Frame = +2
Query: 41 LHKLELIVTNKENCREQYKGHDRV--------VTDNKFCAGLVRAGGRDYDNTDLGAPAF 196
L + +L V + C E++ G + VT+ CAG G++ N D G P
Sbjct: 174 LQQADLRVVSNRACSERHMGSKNMRLENGTWRVTETMLCAGDAGKTGKNGCNGDSGGPFV 233
Query: 197 FQN-----ALVGIVSFGK---SNANDISP*YSPASVL 283
+N L G+VS+G S+AN S ++ SVL
Sbjct: 234 CRNTAGQWVLQGVVSWGDPECSSANHFSV-FARVSVL 269
>SB_29023| Best HMM Match : Pentaxin (HMM E-Value=2.9e-11)
Length = 204
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +2
Query: 26 VSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDY----DNTDLGAPA 193
++D H + +N E + Y + V + G +GG + + DLG
Sbjct: 78 IADSRFHSVVATWSNSEGEFQFYVDNSLVTKEKNLATGRTISGGGVFIIGNEQDDLGGGF 137
Query: 194 FFQNALVGIVS 226
F NALVG ++
Sbjct: 138 SFGNALVGTIT 148
>SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)
Length = 270
Score = 27.9 bits (59), Expect = 2.3
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Frame = -2
Query: 302 CRI-HSVKELMLVSTTGRCHWHCSFQKIRCLLAHFGRRQGHPSQYC------RSRGHQPG 144
CRI H ++ RC + CLL F R+Q + C + +G +P
Sbjct: 155 CRICHGGPTTEMLIAPCRCCGSAKYVHQSCLLMWFDRKQDKTCELCLYKVEMKPKGLKP- 213
Query: 143 PNRRRICYQ----SRRDHDPCTVPCSFLCWS 63
P +R +C R+D+D F+C S
Sbjct: 214 PTKRFVCASGLCLQRQDYDRAIARKRFVCAS 244
>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 251 CHWHCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPGPNRRRICY 120
CH F+++ LLA F R+ HP + R H P R++C+
Sbjct: 252 CHPLAPFRQMCYLLAPFRRQMCHPLAHFRQMCHPLAP-FRQMCH 294
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 162 SRPPARTKPAQNLLSVTTRS*P 97
+RPP KPA N LS T RS P
Sbjct: 594 ARPPPTAKPAVNRLSPTRRSLP 615
>SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 26.6 bits (56), Expect = 5.4
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Frame = -2
Query: 287 VKELMLVSTTGRCHWHCSFQKIRCLLAHFGRRQGHPSQY-CRSRGH----QPGPNRRRIC 123
V E+ S + C C F C+ +FGRR + SQ+ C QP RRR
Sbjct: 141 VVEVFNTSDSFSCQAKC-FDVNSCVSVNFGRRSANDSQFTCEINNSTHLLQPLGLRRRPG 199
Query: 122 YQSRRDHDPC-TVPC 81
+ DPC + PC
Sbjct: 200 FTYFGVADPCFSNPC 214
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 193 LLPKCASRHRIFWKEQCQ*HLPVVLTSISSFTE 291
+ P+ A F QC+ H+ V+LT +SS+ E
Sbjct: 191 ITPRLALTTAEFLAYQCEKHVLVILTDMSSYAE 223
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -2
Query: 296 IHSVKELMLVSTTGRCHWHCSFQKIRCLLAHFGRRQGHPSQY 171
+ ++KEL+ ++ + HC ++ R LL+ + RR+ Q+
Sbjct: 434 MQALKELIELAEKEKAELHCQVEEERRLLSFYARRKTEDLQF 475
>SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -3
Query: 169 VVVAATSPDQTGAEFVISHDAIMTLVLFPAV----FFVGHNE 56
+++ T+P+QT V++ + TL LF + F+GHN+
Sbjct: 139 LLLLTTTPEQTNRNAVVNLCMMGTLELFDGIEMREVFIGHNQ 180
>SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 287 VKELMLVSTTGRCHWHCSFQKIRCLLAHFGRRQGHPSQY 171
V E+ S CH C CL +FGRR + SQ+
Sbjct: 42 VVEVFNTSNLVNCHMKC-LDVSSCLSLNFGRRSVNDSQF 79
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 26.2 bits (55), Expect = 7.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 254 RCHW--HCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPGPNRRR----ICYQSRRDHDPC 93
+CH+ HC + K C + ++ R + R + + P R R CY+ RD P
Sbjct: 52 KCHYKYHC-YLKCSCKVKYYHCRYRRRCVW-RYKYYHGKPRRYRHCYRYCYRRIRDASPV 109
Query: 92 TVPCS 78
PCS
Sbjct: 110 YYPCS 114
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 96 LYCSLQFSLLVTMSSSLW 43
+YC QFSL +T S+W
Sbjct: 706 VYCGAQFSLALTRDGSVW 723
>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 25.8 bits (54), Expect = 9.4
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +2
Query: 83 REQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNALV--GIVSFGKSNANDIS 256
++Q+KG DR+ T K+ A R Y +G P+ A+V ++ G +
Sbjct: 84 KDQFKGIDRLDTLKKYGAPNFRKASGSYPVYGMGQPSRDGLAVVIEELICRGHKEIVSFN 143
Query: 257 P*YSPASVLSLNGSY 301
P LSLN Y
Sbjct: 144 LREEPVIFLSLNHDY 158
>SB_1423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 65 TNKENCREQYKGHDRV--VTDNKFCAGLVRAGGRDYDNTD 178
+N E+ + GH R +DN+F GL+R GG Y D
Sbjct: 11 SNAESLECRVFGHIRAEHFSDNEFLIGLIR-GGNQYGKKD 49
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -2
Query: 197 RRQGHPSQYCRSRGHQP---GPNRRRICYQS 114
RR+G+ ++ C + H+P G RR+C +S
Sbjct: 360 RRRGYTTRNCWTNNHEPTARGSMHRRMCLRS 390
>SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 25.8 bits (54), Expect = 9.4
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +2
Query: 53 ELIVTNKENCREQYKGHDR 109
+ ++TN +C++++KG DR
Sbjct: 631 DALITNCHHCKQEFKGSDR 649
>SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32)
Length = 255
Score = 25.8 bits (54), Expect = 9.4
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = +2
Query: 53 ELIVTNKENCREQYKGHDR 109
+ ++TN +C++++KG DR
Sbjct: 193 DALITNCHHCKQEFKGSDR 211
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,462
Number of Sequences: 59808
Number of extensions: 241060
Number of successful extensions: 525
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -