Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0549
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   0.68 
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   0.68 
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    27   3.6  
U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin ...    27   4.8  
Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical pr...    26   6.3  
U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 191 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 87
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 191 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 87
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 193 LLPKCASRHRIFWKEQCQ*HLPVVLTSISSFTE 291
           + P+ A     F   QC+ H+ VVLT +SS+ E
Sbjct: 253 ITPRIALTSAEFLAYQCKKHVLVVLTDMSSYAE 285


>U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin
           protein 5 protein.
          Length = 419

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 2   GTTVQGGSVSDGNLHKLELIVTNKENCREQYKGH 103
           G  + G   SD      EL  T+ +NC   Y GH
Sbjct: 133 GKWLNGNCESDPRAFVCELPATHADNCTYNYNGH 166


>Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical
           protein F08A8.6 protein.
          Length = 362

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 218 CLLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPC 93
           CLL H   R GHP     +  ++    +  + ++ +RD+ PC
Sbjct: 66  CLLVHKLLRDGHPVVPKEAYRNEKRFTQLALHWKDKRDYGPC 107


>U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical
           protein F38A5.1b protein.
          Length = 575

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 179 LGAPAFFQNALVGIVSFGKSNANDIS 256
           + A A FQN    + SF KSNAN+I+
Sbjct: 17  IDAQAMFQN-YANLRSFSKSNANEIN 41


>U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical
           protein F38A5.1a protein.
          Length = 589

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 179 LGAPAFFQNALVGIVSFGKSNANDIS 256
           + A A FQN    + SF KSNAN+I+
Sbjct: 31  IDAQAMFQN-YANLRSFSKSNANEIN 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,233,330
Number of Sequences: 27780
Number of extensions: 172758
Number of successful extensions: 492
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)