Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0549
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.33 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   1.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   2.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.2  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   7.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   7.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 0.33
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +2

Query: 44  HKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN------ 205
           H L+    N     E YK +  ++  N  CA    A G+D    D G P  +QN      
Sbjct: 308 HILQKTTLNMLTQVECYKYYGNIMV-NAMCA---YAKGKDACQMDSGGPVLWQNPRTKRL 363

Query: 206 ALVGIVSFG 232
             +GI+S+G
Sbjct: 364 VNIGIISWG 372


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 191 QGHPSQYCRSRGHQP 147
           Q HPSQY   RG  P
Sbjct: 320 QHHPSQYHPHRGSSP 334


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 299 RIHSVKELMLVSTTGRCHWHCSFQK 225
           ++H+ KE +L   T R  + CS ++
Sbjct: 254 KLHNEKEKLLEERTSRKRYSCSRER 278


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -2

Query: 248 HWHCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPG 144
           +W C+ +K        G+ +GH     R RG   G
Sbjct: 65  YWQCNDKKTDIEETGRGKGRGHGKGGSRGRGGNRG 99


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 200 GRRQGHPSQYCRSRGHQPGPN 138
           G R   PS      GH P PN
Sbjct: 109 GYRSASPSPGMGHMGHTPTPN 129


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 110 RDHDPCTVPCSF 75
           R+HDP   P SF
Sbjct: 400 REHDPAKFPPSF 411


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 285  ERTDAGEY 262
            +RTDAGEY
Sbjct: 1337 DRTDAGEY 1344


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 137 RRRICYQSRRDHDPCTVPCSFLCWSQ*VRACGG 39
           RRR+  QS R         +  CW+   +  GG
Sbjct: 237 RRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 137 RRRICYQSRRDHDPCTVPCSFLCWSQ*VRACGG 39
           RRR+  QS R         +  CW+   +  GG
Sbjct: 237 RRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,555
Number of Sequences: 438
Number of extensions: 2006
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)