Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0549
(345 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16080.1 68417.m02438 hypothetical protein contains Pfam prof... 29 1.1
At5g25170.1 68418.m02984 expressed protein 28 1.5
At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p... 27 3.4
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 27 4.4
At5g56450.1 68418.m07046 mitochondrial substrate carrier family ... 26 5.9
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 26 5.9
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 26 5.9
At1g11120.1 68414.m01273 expressed protein 26 5.9
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat... 26 7.7
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 26 7.7
>At4g16080.1 68417.m02438 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 379
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 99 PLYCSLQFSLLVTMSSSLWRLPSDTL 22
P Y L FS+LVT +SLW L D +
Sbjct: 212 PQYHELNFSILVTGHTSLWSLLQDNV 237
>At5g25170.1 68418.m02984 expressed protein
Length = 218
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 124 QILRRFGPGWWPRLRQY*LGCPCLLP 201
Q+ RR P W RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152
>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
protein contains Pfam profile PF05071: NADH:ubiquinone
oxidoreductase 17.2 kD subunit
Length = 184
Score = 27.1 bits (57), Expect = 3.4
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 113 RRDHDPCTVPCSFLCW 66
RR+ DP ++P ++CW
Sbjct: 47 RREEDPTSIPVEWICW 62
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 77 NCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNALVGIVSFGKSNAN 247
+C + D +T FC L R APA+ NAL V+ G N N
Sbjct: 175 DCGTLFSRKDSFITHRAFCDALAEESARFVSVPP--APAYLNNALDVEVNHGNINQN 229
>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 330
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 270 GEYYGEM-SLALLFPKDTMPTSAFWKKAGAPKSV 172
G Y+G ++ +F +DT P A WK+ G ++V
Sbjct: 216 GLYFGGFDTVKEIFSEDTKPELALWKRWGLAQAV 249
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 185 HPSQYCRSRGHQPGPN-RRRICYQSRRDHDPCTVPCS 78
HPS+Y R++ + G + RRRIC+ + +PCS
Sbjct: 162 HPSRY-RTQPCKDGTSCRRRICFFAHTTEQLRVLPCS 197
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 2 GTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKF 130
G + GS SD NL + T K+ C + YKGH R ++ +F
Sbjct: 61 GEFLASGS-SDTNLRVWD---TRKKGCIQTYKGHTRGISTIEF 99
>At1g11120.1 68414.m01273 expressed protein
Length = 367
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 246 LALLFPKDTMPTSAFWKKAGAPKSVLS*SRPPA 148
+++L P D +PTSA K P S + +RPP+
Sbjct: 97 VSVLMPGDDIPTSATADKKDDPVSGKNTARPPS 129
>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
/ citrate hydro-lyase/aconitase, putative strong
similarity to SP|P49608 Aconitate hydratase, cytoplasmic
(EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
{Cucurbita maxima}; contains Pfam profiles PF00330:
Aconitase family (aconitate hydratase), PF00694:
Aconitase C-terminal domain
Length = 995
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 120 ITNSAPVWSGLVAATTTILTWVP 188
IT P+W+ L A ++T+ +W P
Sbjct: 717 ITEGNPLWNELSAPSSTLYSWDP 739
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 2 GTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKF 130
G + GS SD NL ++ K+ C + YKGH R ++ +F
Sbjct: 112 GEFLASGS-SDANLKIWDI---RKKGCIQTYKGHSRGISTIRF 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,755,453
Number of Sequences: 28952
Number of extensions: 158955
Number of successful extensions: 406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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