Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0547
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       57   8e-09
07_03_1662 + 28447419-28447666,28448429-28448573                       52   2e-07
02_04_0083 + 19566476-19566539,19566781-19567006,19567206-195673...    29   2.5  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    28   3.3  
01_06_1016 + 33830751-33831387,33831470-33831527,33831620-338317...    28   4.4  
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473...    27   7.6  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
 Frame = +1

Query: 265 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNIN 438
           V V+RDKTKV +T+D PFS                  DWLRV+AS  D   YELRYFNI 
Sbjct: 64  VTVSRDKTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNI- 122

Query: 439 ADSDNEDNE 465
           A+++ E+ +
Sbjct: 123 AENEGEEED 131



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
 Frame = +2

Query: 140 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNN--QAITLS 271
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  N  +++T+S
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVS 67


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +1

Query: 265 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNIN 438
           V V RDKTKV +T+D  FS                  DWLRV+A+  D   YELRYFNI 
Sbjct: 63  VTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNI- 121

Query: 439 ADSDNEDNE 465
           A+++ E+ +
Sbjct: 122 AENEGEEED 130



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +2

Query: 140 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEG 241
           ++ F IDC+ P ED I+++ + EK+L+E +KV G
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAG 53


>02_04_0083 +
           19566476-19566539,19566781-19567006,19567206-19567389,
           19569483-19569582,19570015-19570122,19570373-19570452,
           19570566-19570644,19570774-19570832,19570938-19571006,
           19571577-19571690,19571772-19571840,19572340-19572361,
           19572455-19572522,19573630-19573715,19574220-19574349,
           19575032-19575133,19575211-19575279
          Length = 542

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 99  FTPFLASLLVQLGFLSHRFL 40
           FTPFLA  ++Q+ F  H F+
Sbjct: 260 FTPFLAQFIMQIKFFPHEFI 279


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 282 IPGDDNVIAWLFV--LPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRLMPLPRI 109
           +  D+ +  W F+  L   + C    F+ LP +KILSSA    +++  KL  +++  P +
Sbjct: 259 VTNDEPIETWEFMSCLMEAMGCQRPKFN-LP-AKILSSAALFSNMMYHKLGLQILSSPLL 316

Query: 108 LPPFTPFLA 82
            P    FL+
Sbjct: 317 HPDMVYFLS 325


>01_06_1016 +
           33830751-33831387,33831470-33831527,33831620-33831703,
           33831819-33831954,33833191-33833451
          Length = 391

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 312 NVCGDSDFRLIPGDDNVIAWLFVLPSTLTCSFKYFSKLP--TSK 187
           N C  S+ R   G  +   W FV    L+ S+KY  K+P  TSK
Sbjct: 299 NACRISEVRRDFGSFSKYVWAFVNNKPLSPSYKYSRKIPVKTSK 342


>06_03_0576 -
           22443668-22444146,22446239-22446393,22447251-22447331,
           22448475-22448618,22449670-22449695,22449748-22449811,
           22449905-22449996,22450550-22450780,22451238-22451678,
           22451754-22452293
          Length = 750

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 312 NVCGDSDFRLIPGDDNVIAWLFVLPSTLTCSFKYFS 205
           N   D D RL+  DD V +   VLP    CS   F+
Sbjct: 666 NAARDCDLRLLRSDDYVASLPAVLPELWICSLCRFN 701


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,390,470
Number of Sequences: 37544
Number of extensions: 205719
Number of successful extensions: 631
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)