Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0547
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   1e-04
SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)         43   1e-04
SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)        29   1.5  
SB_19505| Best HMM Match : PP-binding (HMM E-Value=9)                  29   1.9  
SB_10893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_43777| Best HMM Match : PP-binding (HMM E-Value=9)                  29   1.9  
SB_36463| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_20619| Best HMM Match : Na_sulph_symp (HMM E-Value=0.0069)          27   7.8  

>SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = +1

Query: 376 DWLRVVASAHDAYELRYFNINADSDNEDNED 468
           DWLRVVA+ H +YELRYF I+ + ++E+ ++
Sbjct: 18  DWLRVVAADHTSYELRYFQISNEEEDEEADE 48


>SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)
          Length = 50

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = +1

Query: 376 DWLRVVASAHDAYELRYFNINADSDNEDNED 468
           DWLRVVA+ H +YELRYF I+ + ++E+ ++
Sbjct: 18  DWLRVVAADHTSYELRYFQISNEEEDEEADE 48


>SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)
          Length = 290

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 158 DCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNQAITLSSPGI 283
           +C    ED I+D  N++ + KEHV +    NN AI L++ G+
Sbjct: 84  NCPENIED-IIDGENYQLFFKEHVFLR-NPNNFAIQLNTDGV 123


>SB_19505| Best HMM Match : PP-binding (HMM E-Value=9)
          Length = 169

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 282 IPGDDNVIAWLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQS 157
           +P +DN   WL VL    T    +  ++  S  +S   C QS
Sbjct: 124 VPREDNFSLWLHVLTKKPTLGCSFMQQIQCSVAISELFCAQS 165


>SB_10893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 282 IPGDDNVIAWLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQS 157
           +P +DN   WL VL    T    +  ++  S  +S   C QS
Sbjct: 312 VPREDNFSLWLHVLTKKPTLGCSFMQQIQCSVAISELFCAQS 353


>SB_43777| Best HMM Match : PP-binding (HMM E-Value=9)
          Length = 169

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 282 IPGDDNVIAWLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQS 157
           +P +DN   WL VL    T    +  ++  S  +S   C QS
Sbjct: 124 VPREDNFSLWLHVLTKKPTLGCSFMQQIQCSVAISELFCAQS 165


>SB_36463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 77  FWCNWAFLATGFFVTAIVA 21
           FW N+AFL     VTAIVA
Sbjct: 64  FWVNFAFLMLNLCVTAIVA 82


>SB_20619| Best HMM Match : Na_sulph_symp (HMM E-Value=0.0069)
          Length = 215

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 267 NVIAWLFVLPSTLTCSFKYFSKLPT 193
           NV  W  ++P+T++CSF +   + T
Sbjct: 121 NVHPWYLMIPATVSCSFAFMLPVAT 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,233,643
Number of Sequences: 59808
Number of extensions: 245628
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)