Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0547
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    49   1e-06
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    31   0.55 
AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical ...    29   2.2  
U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine rece...    27   6.8  
U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine rece...    27   6.8  
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    27   6.8  
Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 256 SNHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYFNI 435
           +N+V V   K+KV++ +++PFS                  DWLRVVA   + YE+RYF+I
Sbjct: 60  ANNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYFHI 119

Query: 436 NADSD-NEDNE 465
           N   D   D+E
Sbjct: 120 NDGEDAGSDHE 130



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = +2

Query: 140 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNQA 259
           +LKF ++C +P ED IL + + E +L E +KV GKT + A
Sbjct: 20  HLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLA 59


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 280 PWRRQRDCLVICFALNFDVFLQVFLEVTYV*DTILSGMRAVD 155
           PW R RD L     + FD+ L   LEV Y  D ILS    ++
Sbjct: 7   PWDRFRDWLHCICVVTFDLELGQALEVIYPGDAILSNTEKIN 48


>AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical
           protein Y105C5A.11 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -3

Query: 213 YFSKLPTSKILSSAGCVQSIVNFKLIFRLMPLPRILPPFTPFLASLLVQLGFLSHRF 43
           +F       +++   CV  ++  +LI  + PL  +L PF  F  S+L +L FL + +
Sbjct: 69  FFVLYAAEAVMNVYSCVIEVLFGRLIIYMTPLCPVLSPFF-FTPSILTKLYFLLNHY 124


>U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform b protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 213 YFSKLPTSKILSSAGCVQSIVNFKLIFRLMPLPRILPPFTPFLASLLVQLGFLSHRF 43
           +F       +++   CV  ++  +LI  + PL   L PF  F  S+L +L FL + +
Sbjct: 69  FFVLYAAEAVMNVYSCVIEVLFGRLIIYMTPLCPALSPFF-FTPSILTKLYFLLNHY 124


>U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform a protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -3

Query: 213 YFSKLPTSKILSSAGCVQSIVNFKLIFRLMPLPRILPPFTPFLASLLVQLGFLSHRF 43
           +F       +++   CV  ++  +LI  + PL   L PF  F  S+L +L FL + +
Sbjct: 69  FFVLYAAEAVMNVYSCVIEVLFGRLIIYMTPLCPALSPFF-FTPSILTKLYFLLNHY 124


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 140 NLKFTIDCTHPAEDSILDV 196
           +LKF ++C +P ED IL +
Sbjct: 20  HLKFNVECKNPVEDGILRI 38


>Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical
           protein ZK1098.8 protein.
          Length = 910

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 191 DVGNFEKYLKEHVKVEGKTNNQAITLSS 274
           DV +F KYLKE  +V G+     IT+ S
Sbjct: 692 DVSDFRKYLKEIERVGGEHLRHIITVPS 719


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,717,625
Number of Sequences: 27780
Number of extensions: 179963
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)