Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0547
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    49   2e-06
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    49   2e-06
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    47   6e-06
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    45   3e-05
At2g24180.1 68415.m02889 cytochrome P450 family protein                28   3.7  
At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /...    27   4.8  
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    27   4.8  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   4.8  
At2g36885.2 68415.m04523 expressed protein                             27   6.4  
At2g36885.1 68415.m04522 expressed protein                             27   6.4  
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain...    27   8.5  
At1g79930.1 68414.m09340 heat shock protein, putative contains P...    27   8.5  

>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +1

Query: 265 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNIN 438
           V + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYFNI 
Sbjct: 57  VTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI- 115

Query: 439 ADSDNEDNE 465
           A+++ E+ +
Sbjct: 116 AENEGEEED 124



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 143 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 244
           + FTIDC+ P +D I+++ + EK+L+E +KV GK
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGK 49


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +1

Query: 265 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNIN 438
           V + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYFNI 
Sbjct: 57  VTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI- 115

Query: 439 ADSDNEDNE 465
           A+++ E+ +
Sbjct: 116 AENEGEEED 124



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 143 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 244
           + FTIDC+ P +D I+++ + EK+L+E +KV GK
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGK 49


>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +1

Query: 265 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNIN 438
           V + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYFNI 
Sbjct: 57  VSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI- 115

Query: 439 ADSDNEDNE 465
           A+++ E+ +
Sbjct: 116 AENEAEEED 124



 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 143 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 244
           + FTIDC+ P +D I+++ + EK+L+E +KV GK
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGK 49


>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +2

Query: 143 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGK 244
           + F IDC+ P +D+IL++   EK+L+E +KV GK
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGK 51



 Score = 35.9 bits (79), Expect = 0.014
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 259 NHVVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFN 432
           N V + R   K+ + A+  FS                  DWLRV+AS  D   YE+RYF 
Sbjct: 57  NSVSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFR 116

Query: 433 IN 438
           I+
Sbjct: 117 ID 118


>At2g24180.1 68415.m02889 cytochrome P450 family protein
          Length = 503

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 141 LIFRLMPLPRILPPFTPFLASL--LVQLGFLSHRFL 40
           LIF L+  P+ LPP  P L  L  + QLG L HR L
Sbjct: 25  LIFFLLRSPKNLPPGPPRLPILGNIHQLGSLPHRSL 60


>At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and SEC14 cytosolic
           factor (SP:P45816) [Candida lipolytica]
          Length = 592

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 167 HPAEDSILDVGNFEKYLKEHVKVEGKTNNQAITLSSPGIRRKSLSPQTFLFQRG 328
           HP +  +++V   E+YLK HV+   +T  + +   S   +R+  +  T L   G
Sbjct: 182 HPGK--LMEVTTIERYLKYHVQEFERTLQEKLPACSVAAKRRVTTTTTILDVEG 233


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 246 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 127
           +L S       YF   PT +IL+ A   QS+++ ++  +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 255  WLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 127
            +L +L S       +F   P  +IL+     QS+V+  + FRL
Sbjct: 1023 FLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065


>At2g36885.2 68415.m04523 expressed protein
          Length = 227

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 207 SKLPTSKILSSAGCVQSIVNFKLIFRLMPLPRILPPFTPFLASLL 73
           S LP+S++L+S  C+    N      L    R   P TP  +S++
Sbjct: 18  SSLPSSRLLNSTQCLSRFSNVSSFPALSTFRRRKIPLTPACSSIV 62


>At2g36885.1 68415.m04522 expressed protein
          Length = 256

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 207 SKLPTSKILSSAGCVQSIVNFKLIFRLMPLPRILPPFTPFLASLL 73
           S LP+S++L+S  C+    N      L    R   P TP  +S++
Sbjct: 18  SSLPSSRLLNSTQCLSRFSNVSSFPALSTFRRRKIPLTPACSSIV 62


>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to glucocorticoid receptor DNA binding factor
           1 [Canis familiaris] GI:23266717; contains Pfam profiles
           PF00169: PH domain, PF00620: RhoGAP domain
          Length = 827

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 447 AVSVDVEVAQFVSVMS-GGHHSKPVTQIVLLEVT 349
           A S+ + + ++  VM  G HH  P T   L+E+T
Sbjct: 754 AASLGIPMEEYSPVMDYGRHHHPPATSAALMELT 787


>At1g79930.1 68414.m09340 heat shock protein, putative contains Pfam
           profile: PF00012 Heat shock hsp70 proteins; similar to
           heat-shock proteins GB:CAA94389, GB:AAD55461
           [Arabidopsis thaliana]
          Length = 831

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 19  FATMAVTK-KPVAKKAQLHQKTGQKRSEGWQNPRQRHQAE 135
           F    +TK KPVAK      K G++  EG   P Q   AE
Sbjct: 780 FCRPIMTKPKPVAKAEAPQAKGGEQADEGKSEPEQPASAE 819


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,097,950
Number of Sequences: 28952
Number of extensions: 166460
Number of successful extensions: 498
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)