Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0546
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.9
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.9
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 2.9
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 2.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.9
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 27 2.9
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 3.8
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 6.7
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 25 6.7
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 8.8
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -3
Query: 619 PDPKPVTLVGSATSLSSSVTDNVRAQAEANQVDSTPIPPPLLMSQTKKLPRNCPTLGT 446
P P P TL +T+ S + +QV+ P PP SQ + P N T T
Sbjct: 239 PPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPP--PPATPSQPPRPPTNASTRST 294
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 409 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAELGSS 522
VLPT T S VS SSL++F ST GS+
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGST 281
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 574 SSSVTDNVRAQAEANQVDSTPIPPPLLMSQTKKLPRNC 461
S+S + N VDS+ +P P+ +S LP +C
Sbjct: 284 SNSYGYEININESTNHVDSSYLPHPIQLSNYFTLPSSC 321
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 562 TDNVRAQAEANQVDSTPIPPPLLMSQTKKLPRNCPTL 452
T NV A + + +P PPP+ S T P + P+L
Sbjct: 403 TSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSL 439
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.9
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 574 SSSVTDNVRAQAEANQVDSTPIPPPLLMSQTKKLPRNCPTLGTPL-TAVLYRPLARPRQS 398
S+ VT + + + V STP+ + T L + P TPL T + P S
Sbjct: 506 STPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTS 565
Query: 397 TTITLQSETASKA 359
T +T + T S +
Sbjct: 566 TPVTSSNYTISSS 578
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 67 SHYVEGVSRYVWMPDGEGVPHLVDLEETAEEDILMSR 177
S Y +G+S V + G+GV H+V + E+ + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 103 SKRIGLHLPHSDCCLQGSW 47
S + LPHSD L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 255 NSIRNSNYNGNLPLFVIVHGWNSNGN 332
+SIRNS++N L LF V S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 234 SYYKWQCNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRP 359
S+ +Q NS+ N+N PL + GW S+ +S+ ++++ P
Sbjct: 12 SFPNYQENSL-NTNEEQTNPLESLRDGWASSNSSSSSSLLLP 52
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 521 LDPNSASVVDEPDQKVAKELSDTGNSIDGSV 429
L+PN+ VV P+ KV+ + + GS+
Sbjct: 523 LEPNTCLVVTPPEAKVSVSFEEISDQCAGSI 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,988
Number of Sequences: 5004
Number of extensions: 60336
Number of successful extensions: 247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -