Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0546
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.048
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 28.7 bits (61), Expect = 0.048
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = -3

Query: 607  PVTLVGSATSLSSSVTDNVRAQAEANQVDSTPIP--PPLLMSQTKKLPRNCPTLGTPLTA 434
            PV  V  +T LS  V + + +          P    P   MS T       P +GTP T 
Sbjct: 797  PVPQVNDSTILSP-VREKLSSSQPMQPPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTG 855

Query: 433  VLYRPLARPRQST 395
            ++Y+P   P Q++
Sbjct: 856  MMYKPFLIPEQTS 868


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 410  TTPVHNNNVAVGDGQQGGAD 351
            + P +N +   GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 532  NQVDSTPIPPPLLMSQTKKLP 470
            NQV S P+  PLL    + +P
Sbjct: 1091 NQVGSGPLSEPLLTQTMEDVP 1111


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 410  TTPVHNNNVAVGDGQQGGAD 351
            + P +N +   GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 532  NQVDSTPIPPPLLMSQTKKLP 470
            NQV S P+  PLL    + +P
Sbjct: 1087 NQVGSGPLSEPLLTQTMEDVP 1107


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 177 ERCKQPILAFHQT*PKQPSSYYKWQCNSIRNSNYN 281
           E  KQ +       P   S  +KW   SI N+N N
Sbjct: 106 EAKKQNLKVILDLVPNHTSDQHKWFQMSINNTNNN 140



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 9  GWLNSIVFWQCYP 47
          GW  + +F+Q YP
Sbjct: 23 GWWKNAIFYQVYP 35


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 240 YKWQCNSIRNSNYNGN 287
           Y +  N+  N+NYN N
Sbjct: 331 YNYNNNNYNNNNYNNN 346


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 255 YIAICNNLMVVLVTSGEKPV 196
           Y+AIC+ L V  ++  ++P+
Sbjct: 140 YLAICHPLRVYTISGLKRPI 159


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 98  FGCLMARVFLTSLT 139
           FGCL  R+F   LT
Sbjct: 275 FGCLSTRLFYYQLT 288


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = +2

Query: 92   DTFGCLMARVFLTSLTWKKRPRKTSLCQGTVQTTNTGFSPD 214
            D   C++ +    +   K  P +   C   V TT    +PD
Sbjct: 1440 DETSCMLDKTRAQTFDGKDYPLRLGPCWHAVMTTYPRINPD 1480


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 314 LEQQRKLRCEHHD 352
           L + R +RC HHD
Sbjct: 142 LTKSRLMRCLHHD 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,339
Number of Sequences: 438
Number of extensions: 4955
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)