Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0545
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0819 - 24977204-24977290,24977372-24977746,24977823-249781... 31 0.66
06_03_1002 - 26826316-26826522 30 1.5
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 30 2.0
05_03_0586 + 15782645-15782721,15782781-15783405 29 2.6
06_03_0089 - 16475677-16476309 29 3.5
08_01_0220 - 1751367-1752854 29 4.6
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 28 6.1
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 28 6.1
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 28 8.1
>06_03_0819 -
24977204-24977290,24977372-24977746,24977823-24978199,
24978456-24978770,24978861-24979296,24979386-24979463
Length = 555
Score = 31.5 bits (68), Expect = 0.66
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 169 RWYCYHQLPLPFNC-YLFPRRILR 237
+W YH+ P P NC + +P R++R
Sbjct: 263 KWCSYHEFPTPHNCEFHYPERVMR 286
>06_03_1002 - 26826316-26826522
Length = 68
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 598 SAPVLSGLVAATTTILTWVPCLLPKCASRHR 690
S P G VAAT WV C LP C + R
Sbjct: 18 SCPYCGGGVAATDVEAKWVLCFLPLCLNNKR 48
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -2
Query: 668 GRRQGTQVSIVVVAATSPDKTGAEFVISHDAIMTVVLFPAVFFVGHNEFELVEVPSDTLP 489
G Q + ++ D T ++F H+ + + V+ P +NE +VE+PS +
Sbjct: 1965 GHGNAKQTETETIYSSVDDSTSSDFSSVHNLVRSTVVAPCYSSSKNNERIIVELPSLMVR 2024
Query: 488 P*TVV 474
P VV
Sbjct: 2025 PFKVV 2029
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 681 TGAFWKKAGHPSQYCRSRGHQPGQNR 604
+ A WK GH Q C GH PGQ R
Sbjct: 148 SSACWKAVGHDDQQC---GHCPGQRR 170
>06_03_0089 - 16475677-16476309
Length = 210
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 130 SIPTHLESMVPTVRWYCYHQLPLPFNCYLFPRRILRSCIPSHIA 261
S P VP V +YC +LP P L RR+ R C H A
Sbjct: 115 SRPAAQRCQVPAVPYYCATELPCP---PLLRRRLRRCCTGEHQA 155
>08_01_0220 - 1751367-1752854
Length = 495
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 359 ASYE*HMPSTSAQTSSRVLLSNKVS*YPRVFLLICSDGELPFKAAVYLTAPPQA 520
A+++ PS +A+ +L+S + Y FLL+ + P +AAV L A P A
Sbjct: 2 ATHQRRHPSVAAELEGTLLISGDLFPY---FLLVALEAGGPLRAAVLLAAYPVA 52
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 206 LKGSGSW**QYQRTVGTIDSRWV 138
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 206 LKGSGSW**QYQRTVGTIDSRWV 138
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 342 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 452
L GC+ N C R K+P C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,044,770
Number of Sequences: 37544
Number of extensions: 483690
Number of successful extensions: 1375
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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