Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0545
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     33   0.29 
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.51 
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)              29   3.6  
SB_42753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 28   6.2  
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)                     28   8.3  

>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 510 LHKLELIVTNKENCREQYYGHDRVVTDNKFCAGFVRAGGRDYDNTDLG 653
           L++LE+ + +KE C      ++  + D  FCAGF + GGRD    D G
Sbjct: 136 LNELEVDIVSKEVCNAND-SYNGTINDRYFCAGFPQ-GGRDSCGGDSG 181


>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 471 GNYRSRRQCI*RHLHKLELIVTNKENCREQYYGHDRVVTDNKFCAGFVRAGGRDYDNTDL 650
           G  +  R  +   LH+  + + + + CR+ +   D +VT N FCAGF  +   D    D 
Sbjct: 253 GKRKLWRDRVANRLHEATVPIVDIQTCRKAH--PDYIVTANMFCAGFENSSRGDACQGDS 310

Query: 651 G 653
           G
Sbjct: 311 G 311



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 319 HPEFSEENYDKDVSIVRVTHAIHF 390
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222


>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
          Length = 635

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 211 YLFPRR-ILRSCIPSHIAGSSRRSEP 285
           Y FP R I ++CI  H AGS+RR  P
Sbjct: 394 YTFPSRGISKTCIAFHPAGSNRRVHP 419


>SB_42753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
 Frame = +1

Query: 109 SQPGPN*SIPTHLESMVPTVRWY---CYHQLPLPFNCYLFPRRILRSCIPSHIAGSSRRS 279
           S PGPN   P   E  +  + WY    +       N YL+  +  +S  P H  G     
Sbjct: 110 SMPGPNFPTPVKSERFLNLLSWYKPSLFSSYEPATNAYLY--KGFKSGFPLHFEGD---L 164

Query: 280 EPGEISYVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGP 396
           E  +   +  A +HPE  +    K++   R+  +    P
Sbjct: 165 ESIQSQILLSAFDHPEIVDAKLFKELEAHRLAGSFGIPP 203


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 531  VTNKENCREQYYGHDRVVTDNKFCAGFVRAGGRDYDNTDLG 653
            V N   C++ Y      VT N  CAG+ +   RD  N D G
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAGY-KNKSRDSCNRDSG 1360


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 633 SRGHQPGQNRRRICYQSRRDHDRSTVPCSFL 541
           +R H P   RRR+C+   R   R  VP   L
Sbjct: 28  NRRHHPRHTRRRVCHSRHRSTIRPMVPGGLL 58


>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 696

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 504 RHLHKLELIVTNKENCREQYYGHDRVVTDNKFCAGFVRAGGRDYDNTDLG 653
           R L +  L + +  +C+ +YYG   V +    CAG  R+G     N D G
Sbjct: 221 RILQQAMLPIASHNDCKNKYYG---VSSTAHLCAGEARSGASGGCNGDSG 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,923,302
Number of Sequences: 59808
Number of extensions: 567782
Number of successful extensions: 1607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)