Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0545
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.41
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.41
At5g20480.1 68418.m02434 leucine-rich repeat transmembrane prote... 29 2.2
At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containi... 29 3.9
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 29 3.9
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 29 3.9
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 29 3.9
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 28 5.1
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 28 5.1
At3g29110.1 68416.m03645 terpene synthase/cyclase family protein... 28 6.8
At5g63720.1 68418.m07998 hypothetical protein 27 8.9
At5g25820.1 68418.m03064 exostosin family protein contains Pfam ... 27 8.9
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 27 8.9
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -1
Query: 450 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 346
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -1
Query: 450 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 346
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At5g20480.1 68418.m02434 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21, Oryza sativa,
PIR:A57676
Length = 1031
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +2
Query: 203 STATCFQGEFYDPAYRRISLDLPVAVSPVKYLMFTLLL-------TIPNSLRRITTRM*A 361
+ A C Q E+ D Y R+ +LP +++ + + +L L TIP+ + + +
Sbjct: 339 AVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQEL 398
Query: 362 SYE*HMPSTSAQTSSRVLLSNKV 430
S E +M S S LL+ +V
Sbjct: 399 SLETNMLSGELPVSFGKLLNLQV 421
>At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 1052
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/67 (23%), Positives = 35/67 (52%)
Frame = +2
Query: 122 QIEVFLPILNQWFQQCAGIVITNYHYLSTATCFQGEFYDPAYRRISLDLPVAVSPVKYLM 301
++ + L +LN+ ++ G + Y+ L T C+ G + D A R + + +++P +
Sbjct: 191 ELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAA-RMLRDMMKRSINP-DVVT 248
Query: 302 FTLLLTI 322
FT L+ +
Sbjct: 249 FTALIDV 255
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 206 LKGSGSW**QYQRTVGTIDSRWV 138
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 206 LKGSGSW**QYQRTVGTIDSRWV 138
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 206 LKGSGSW**QYQRTVGTIDSRWV 138
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 474 NYRSRRQCI*RHL--HKLELIVTNKENCREQYYGHDRVVTDNKFCAGFVRAGGRDYDNTD 647
+YR R+ + RHL HK +L KENC+ ++ V + + RD DNT
Sbjct: 104 SYR-RKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNV---GRHVKKYHSNDNRDKDNTG 159
Query: 648 LG 653
LG
Sbjct: 160 LG 161
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 474 NYRSRRQCI*RHL--HKLELIVTNKENCREQYYGHDRVVTDNKFCAGFVRAGGRDYDNTD 647
+YR R+ + RHL HK +L KENC+ ++ V + + RD DNT
Sbjct: 16 SYR-RKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNV---GRHVKKYHSNDNRDKDNTG 71
Query: 648 LG 653
LG
Sbjct: 72 LG 73
>At3g29110.1 68416.m03645 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family;
similar to epidermal germacrene C synthase GB:AAC39431
[Lycopersicon esculentum], (+)-delta-cadinene synthase
GB:P93665 [Gossypium hirsutum]
Length = 569
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 179 VITNYHYLSTATCFQGEFYDPAYRRISL---DLPVAVSPVKYLMFTLLLTIPNSLRR 340
V+T H+ STAT F+ +F + L +L V + +Y F+ + ++ NSL+R
Sbjct: 288 VVTEMHFFSTATFFEPQFSHARILQTKLFMAELLVDDTCDRYATFSEVESLINSLQR 344
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 214 LFPRRILRSCIPSHIAGSSRRSEPGEISYVH 306
+FP+ +L PS++A SS + P +S ++
Sbjct: 68 VFPKTVLHGAKPSNVADSSETTPPAMLSQIN 98
>At5g25820.1 68418.m03064 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 654
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 153 NGSNSALVLLSPTTTTFQ-LLPVSKENST 236
+ N+ +SPTT T LLP+ KEN+T
Sbjct: 84 SSGNATAPAISPTTATLPPLLPILKENAT 112
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 654 HPSQYCRSRGHQPGQN-RRRICYQSRRDHDRSTVPCS 547
HPS+Y R++ + G + RRRIC+ + +PCS
Sbjct: 162 HPSRY-RTQPCKDGTSCRRRICFFAHTTEQLRVLPCS 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,246,652
Number of Sequences: 28952
Number of extensions: 362215
Number of successful extensions: 980
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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