Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0541
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1HQB9 Cluster: Nucleosome assembly protein isoform 1; ...    58   2e-07
UniRef50_Q8RF13 Cluster: Putative uncharacterized protein FN0914...    36   0.93 
UniRef50_Q0JNF2 Cluster: Os01g0299300 protein; n=5; Oryza sativa...    35   1.6  
UniRef50_Q5AAT7 Cluster: Putative uncharacterized protein SPO22;...    33   4.9  
UniRef50_A5CFP7 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q1HQB9 Cluster: Nucleosome assembly protein isoform 1;
           n=7; Coelomata|Rep: Nucleosome assembly protein isoform
           1 - Bombyx mori (Silk moth)
          Length = 395

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +1

Query: 49  PAPRRRTKKPGKGPAENPAECKQQ 120
           PAPRRRTKKPGKGPAENPAECKQQ
Sbjct: 372 PAPRRRTKKPGKGPAENPAECKQQ 395


>UniRef50_Q8RF13 Cluster: Putative uncharacterized protein FN0914;
           n=3; Fusobacterium nucleatum|Rep: Putative
           uncharacterized protein FN0914 - Fusobacterium nucleatum
           subsp. nucleatum
          Length = 243

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +2

Query: 86  DLPRTPLSANSSSYLIVMQFEFTGALYNNDSGADFPVFSLEK*ISQ*LSRLMVTVISMY- 262
           DL  T  S  ++SY     F  TG +YN  +G    ++ LEK  +    +  + + S Y 
Sbjct: 123 DLYATNFSNKNNSYSTSSGFYLTGNIYNGKNGESLELYGLEKGKNDNARKRTIVIHSAYY 182

Query: 263 -QNIFAKKRNVITISLVCTLQPSEL 334
               FA+K   +  S  C + P++L
Sbjct: 183 ANKSFAEKYGRLGRSKGCLVLPTDL 207


>UniRef50_Q0JNF2 Cluster: Os01g0299300 protein; n=5; Oryza
           sativa|Rep: Os01g0299300 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 617

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 245 TVISMYQNIFAKKRNVITISLVCTLQPSELVQHIPHNGNDCTIIL 379
           +++++ Q +  + R+ +T +L+CTLQPS   Q    N    TI+L
Sbjct: 23  SILTLSQKVLPEWRHALTTALICTLQPSSNKQEARSNYTSKTILL 67


>UniRef50_Q5AAT7 Cluster: Putative uncharacterized protein SPO22;
           n=3; Candida albicans|Rep: Putative uncharacterized
           protein SPO22 - Candida albicans (Yeast)
          Length = 835

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = -1

Query: 371 LYSHCHYEECAAQVLMVVKCKPS*SLSHFFF*QKYSGTYLLLLPSVD*VTAKFISQERKQ 192
           LY H  +E     +L+ +K   S ++   FF +KY   Y+LL+ +   +      +  K+
Sbjct: 174 LYEHSDFENAKFLILIAIKHLESNTMDSSFFQEKYFNCYVLLIKTYKSIGTPETQRNIKK 233

Query: 191 ENQHQNH 171
              H  H
Sbjct: 234 AFSHMQH 240


>UniRef50_A5CFP7 Cluster: Putative uncharacterized protein; n=1;
           Orientia tsutsugamushi Boryong|Rep: Putative
           uncharacterized protein - Orientia tsutsugamushi (strain
           Boryong) (Rickettsia tsutsugamushi)
          Length = 166

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +3

Query: 165 TTMILVLIFL-FSLLRNEFRSNLVD*W*Q**VCTRIFLLKKEM**RLAWFALYNHQNLCS 341
           T+++L++ FL F+ ++  F+  L+D      VC    +L   +  +L   A+Y+H N+  
Sbjct: 77  TSLVLIITFLVFTAIQKNFK--LLDYCNSYIVCLMYLMLFTSL--KLFLIAIYDHININY 132

Query: 342 TFLIMAMTVQLFCHPPLSK 398
             LI  +     C+ PLSK
Sbjct: 133 QILIFKILTSSLCYFPLSK 151


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,586,005
Number of Sequences: 1657284
Number of extensions: 10884170
Number of successful extensions: 25361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25354
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)