Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0541
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    28   1.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   1.9  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   3.4  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   4.4  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -3

Query: 399 ILIEADGKIIVQSLPL*GMCCTSSDGCKVQTKLIVITFLFLAKIFWYILITVTISRLS 226
           I++E      +Q L   G+C   S   + + KLIV   L +A +   IL  ++ SRLS
Sbjct: 551 IILEHPNSSRLQKLRAPGLCPNGSPNYRNRYKLIVFN-LLIALLILSILTIISASRLS 607


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 283  FFSKNILVHTYYCYHQSTKLLRNSFLK 203
            +  K +LVH  +CY + +KL+  SF K
Sbjct: 947  YLKKLLLVHGSWCYQRLSKLILYSFYK 973


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 56  LGDEPRNPARDLPRTPLSANSSSYLIVMQFEFTGALYNN 172
           LG +P+NP+   PR     N  +   V+   F  ++Y+N
Sbjct: 346 LGLDPKNPSASFPRVVSQNNMLTNKPVLNNHFQQSMYSN 384


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 306 WFALYNHQNLCSTFLIMAMTVQLFCHPPLSKSR 404
           W+++ N  +L +  L MA TVQ + H P  +SR
Sbjct: 349 WYSISNDPSLANKRLEMAFTVQEY-HSPNGQSR 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,520
Number of Sequences: 5004
Number of extensions: 48246
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)