Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0541
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17407| Best HMM Match : PADR1 (HMM E-Value=2)                       31   1.2  
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  28   8.1  
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)               28   8.1  

>SB_17407| Best HMM Match : PADR1 (HMM E-Value=2)
          Length = 365

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = -3

Query: 321 CKVQTKLIVITFLFLAKIFWYILI--TVTISRLSY--CEIHFSREKTGKSAPESLLYKAP 154
           CKVQTK++     +LA + W + +   +  SRL+Y  CE  + R +      E  ++  P
Sbjct: 81  CKVQTKVLRAILEYLATLPWQVPLWGVIGASRLNYPNCETSYHRPQLRVLHHECCIHLNP 140

Query: 153 VNSNCITIK*LLLFAL 106
             S  + I  +  +A+
Sbjct: 141 TPSEELIIARIKRYAI 156


>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 640

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 260 YQNIFAKKRNVITISLVCTLQPSELVQHIPHN 355
           + NI     N+ T SL+ TL  S L  +IPHN
Sbjct: 161 FLNILLTLSNLPTDSLLVTLDVSSLYTNIPHN 192


>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
          Length = 417

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 260 YQNIFAKKRNVITISLVCTLQPSELVQHIPHN 355
           + NI     N+ T SL+ TL  S L  +IPHN
Sbjct: 118 FLNILLTLSNLPTDSLLVTLDVSSLYTNIPHN 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,952,291
Number of Sequences: 59808
Number of extensions: 354007
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)