Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0541
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical p...    27   9.5  
U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z68493-10|CAA92797.2|  329|Caenorhabditis elegans Hypothetical
           protein C33A12.14 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/77 (22%), Positives = 38/77 (49%)
 Frame = -3

Query: 291 TFLFLAKIFWYILITVTISRLSYCEIHFSREKTGKSAPESLLYKAPVNSNCITIK*LLLF 112
           T  FLA   +++  +V  + + + ++  +RE+       S+ Y+A V+    TI  ++ +
Sbjct: 203 TPFFLANASFWLACSVLANLILFLKLTRAREQLITQQVSSISYRAQVSITYTTIAMIVFY 262

Query: 111 ALSGVLGRSLAGFLGSS 61
             +G+   S   F G++
Sbjct: 263 VTNGLTLLSYYQFYGTN 279


>U80931-1|AAB37998.2|  343|Caenorhabditis elegans Hypothetical
           protein T01B11.1 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = -3

Query: 288 FLFLAKI-FWYILITVTISRLSYCEIHFSREKTGKSAPESLLYKAPVNSNCITIK*LLL- 115
           ++F++K  FW ILITV IS L   +  ++  K  +S     L    + +N +T+  +L  
Sbjct: 10  WMFISKCQFWVILITVLISLLLVAKAFYNLMKRKRSNYFVFLISI-IAANVLTLLIILFD 68

Query: 114 ---FALSGVLGRSLAGFLGSS 61
              F+  G L   L  F+ +S
Sbjct: 69  IFNFSFKGTLVCKLELFISNS 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,295
Number of Sequences: 27780
Number of extensions: 277933
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)