Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0541
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,...    28   6.7  
At1g78660.3 68414.m09168 gamma-glutamyl hydrolase, putative / ga...    28   6.7  
At1g78660.2 68414.m09169 gamma-glutamyl hydrolase, putative / ga...    28   6.7  
At1g78660.1 68414.m09167 gamma-glutamyl hydrolase, putative / ga...    28   6.7  

>At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile
           PF01301: Glycosyl hydrolases family 35
          Length = 741

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 283 FFSKNILVHTYYCYHQSTKLLRNS 212
           FF K   VH YY YH  T   R S
Sbjct: 285 FFGKGGSVHNYYMYHGGTNFGRTS 308


>At1g78660.3 68414.m09168 gamma-glutamyl hydrolase, putative /
           gamma-Glu-X carboxypeptidase, putative / conjugase,
           putative similar to SP|O65355 Gamma-glutamyl hydrolase
           precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase)
           (Conjugase) (GH) {Arabidopsis thaliana}
          Length = 348

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 110 ANSSSYLIVMQFEFTGALYNNDSGADFPVFSL 205
           A    Y  +++  FT AL  ND+G  FPV+ +
Sbjct: 124 AKKYDYFEIVKKIFTKALERNDAGEHFPVYGI 155


>At1g78660.2 68414.m09169 gamma-glutamyl hydrolase, putative /
           gamma-Glu-X carboxypeptidase, putative / conjugase,
           putative similar to SP|O65355 Gamma-glutamyl hydrolase
           precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase)
           (Conjugase) (GH) {Arabidopsis thaliana}
          Length = 347

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 110 ANSSSYLIVMQFEFTGALYNNDSGADFPVFSL 205
           A    Y  +++  FT AL  ND+G  FPV+ +
Sbjct: 123 AKKYDYFEIVKKIFTKALERNDAGEHFPVYGI 154


>At1g78660.1 68414.m09167 gamma-glutamyl hydrolase, putative /
           gamma-Glu-X carboxypeptidase, putative / conjugase,
           putative similar to SP|O65355 Gamma-glutamyl hydrolase
           precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase)
           (Conjugase) (GH) {Arabidopsis thaliana}
          Length = 348

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 110 ANSSSYLIVMQFEFTGALYNNDSGADFPVFSL 205
           A    Y  +++  FT AL  ND+G  FPV+ +
Sbjct: 124 AKKYDYFEIVKKIFTKALERNDAGEHFPVYGI 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,017,953
Number of Sequences: 28952
Number of extensions: 243996
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)