Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0540
         (724 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    23   2.5  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    23   2.5  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   7.6  

>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 177 DTSTQPFIIVNSI-AHIY 127
           D STQP +++NS+ A +Y
Sbjct: 345 DESTQPMLVLNSVSADVY 362


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 177 DTSTQPFIIVNSI-AHIY 127
           D STQP +++NS+ A +Y
Sbjct: 345 DESTQPMLVLNSVSADVY 362


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 707 IKVIFSSRKLNLTTQQKYCDIPDLSLFNFSLYAPQSTVVKLPNQ 576
           IK+ F +R++      K+ +    S F+F    P  T +   N+
Sbjct: 227 IKIWFQNRRMKAKKDTKFTEQSVTSTFDFLSLHPAETSMNDANR 270


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -3

Query: 707 IKVIFSSRKLNLTTQQKYCDIPDLSLFNFSLYAPQSTVVKLPNQ 576
           IK+ F +R++      K+ +    S F+F    P  T +   N+
Sbjct: 227 IKIWFQNRRMKAKKDTKFTEQSVTSTFDFLSLHPAETSMNDANR 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,551
Number of Sequences: 336
Number of extensions: 3719
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)