Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0540
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 29 2.9
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 29 2.9
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.8
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 3.8
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 29 3.8
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.8
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 389 TSGNVRLVNNRLLSIIDTIIDVFSVGERPSHATWSVRSRHQKYMGCQFYKPCALHTVNLT 568
TS RL +N L+I+D I VF+ E P H + ++H + +G + + T +
Sbjct: 295 TSELKRLDHNVTLAIVDQISSVFTCAELPIHNLVTTATKHPRGIGAIGQQEATIETKHKA 354
Query: 569 SLF 577
+F
Sbjct: 355 DMF 357
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +3
Query: 354 RWLGHCSRYVYGLRATLGL--SIIDYCQ*SIRLSMYSRLARGRPTLPGRYVAVTRNIWAV 527
RW HCS+ +TLG+ + C ++ Y L RP L Y A N +
Sbjct: 259 RWGSHCSKIASSASSTLGIIRRTLKPCSREVKERAYMTLV--RPKL--EYAAAVWNPYTT 314
Query: 528 SSTSHVPCTLSI*LRFLIRQFNY 596
S + RF+ +NY
Sbjct: 315 KDVSLLEQVQKTAARFVTSNYNY 337
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +3
Query: 354 RWLGHCSRYVYGLRATLGL--SIIDYCQ*SIRLSMYSRLARGRPTLPGRYVAVTRNIWAV 527
RW HCS+ +TLG+ + C ++ Y L RP L Y A N +
Sbjct: 1338 RWGSHCSKIASSASSTLGIIRRTLKPCSREVKERAYKTLV--RPKL--EYAAAVWNPYTT 1393
Query: 528 SSTSHVPCTLSI*LRFLIRQFNY 596
S + RF+ +NY
Sbjct: 1394 KDVSLLEQVQKSAARFVTSNYNY 1416
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +3
Query: 354 RWLGHCSRYVYGLRATLGL--SIIDYCQ*SIRLSMYSRLARGRPTLPGRYVAVTRNIWAV 527
RW HCS+ +TLG+ + C ++ Y L RP L Y A N +
Sbjct: 328 RWGSHCSKIASSASSTLGIIRRTLKPCSREVKERAYMTLV--RPKL--EYAAAVWNPYTT 383
Query: 528 SSTSHVPCTLSI*LRFLIRQFNY 596
S + RF+ +NY
Sbjct: 384 KDVSLLEQVQKSAARFVTSNYNY 406
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +3
Query: 354 RWLGHCSRYVYGLRATLGL--SIIDYCQ*SIRLSMYSRLARGRPTLPGRYVAVTRNIWAV 527
RW HCS+ +TLG+ + C ++ Y L RP L Y A N +
Sbjct: 698 RWGSHCSKIASSASSTLGIIRRTLKPCSREVKERAYMTLV--RPKL--EYAAAVWNPYTT 753
Query: 528 SSTSHVPCTLSI*LRFLIRQFNY 596
S + RF+ +NY
Sbjct: 754 KDVSLLEQVQKSAARFVTSNYNY 776
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +3
Query: 354 RWLGHCSRYVYGLRATLGL--SIIDYCQ*SIRLSMYSRLARGRPTLPGRYVAVTRNIWAV 527
RW HCS+ +TLG+ + C ++ Y L RP L Y A N +
Sbjct: 887 RWGSHCSKIASSASSTLGIIRRTLKPCSREVKERAYMTLV--RPKL--EYAAAVWNPYTT 942
Query: 528 SSTSHVPCTLSI*LRFLIRQFNY 596
S + RF+ +NY
Sbjct: 943 KDVSLLEQVQKSAARFVTSNYNY 965
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +3
Query: 354 RWLGHCSRYVYGLRATLGL--SIIDYCQ*SIRLSMYSRLARGRPTLPGRYVAVTRNIWAV 527
RW HCS+ +TLG+ + C ++ Y L RP L Y A N +
Sbjct: 303 RWGSHCSKIASSASSTLGIIRRTLKPCSREVKERAYMTLV--RPKL--EYAAAVWNPYTT 358
Query: 528 SSTSHVPCTLSI*LRFLIRQFNY 596
S + RF+ +NY
Sbjct: 359 KDVSLLEQVQKSAARFVTSNYNY 381
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +3
Query: 354 RWLGHCSRYVYGLRATLGL--SIIDYCQ*SIRLSMYSRLARGRPTLPGRYVAVTRNIWAV 527
RW HCS+ +TLG+ + C ++ Y L RP L Y A N +
Sbjct: 950 RWGSHCSKIASSASSTLGIIRRTLKPCSREVKERAYMTLV--RPKL--EYAAAVWNPYTT 1005
Query: 528 SSTSHVPCTLSI*LRFLIRQFNY 596
S + RF+ +NY
Sbjct: 1006 KDVSLLEQVQKSAARFVTSNYNY 1028
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +3
Query: 354 RWLGHCSRYVYGLRATLGL--SIIDYCQ*SIRLSMYSRLARGRPTLPGRYVAVTRNIWAV 527
RW HCS+ +TLG+ + C ++ Y L RP L Y A N +
Sbjct: 1034 RWGSHCSKIASSASSTLGIIRRTLKPCSREVKERAYMTLV--RPKL--EYAAAVWNPYTT 1089
Query: 528 SSTSHVPCTLSI*LRFLIRQFNY 596
S + RF+ +NY
Sbjct: 1090 KDVSLLEQVQKSAARFVTSNYNY 1112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,659,856
Number of Sequences: 59808
Number of extensions: 410498
Number of successful extensions: 677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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