Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0540
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-3|AAC48037.1|  346|Caenorhabditis elegans Seven tm rece...    31   0.63 
AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AF022974-3|AAC48037.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 207 protein.
          Length = 346

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +1

Query: 1   VPKNMIMLIFFYRRHSDGIALEY*NVFIQMIISVNMSILNTLINMSY 141
           + KN+ +  +FY  +SDGI   Y   FI +I+++ ++I+ +LI + Y
Sbjct: 175 IDKNLYIAPYFYETNSDGITDIYYPSFIAIIVNILITIV-SLITVFY 220


>AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical
           protein Y37E3.1 protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 457 LGWREAVPRYLVGT*PSPEIYGLSVLQAMCPAHCQFNFAF*LGNLTTV 600
           +G  E +P  LVG   + E+YG+++       +C  NF F +G+  T+
Sbjct: 304 IGHDETIPVALVGVDAAGEVYGITIY------NCLSNFGFVIGDTVTI 345


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +2

Query: 422 LLSIIDTIIDVFSVGERPSHATWSVRSRHQKYMGCQFYKPCALHTVNLTSLF 577
           L+S +  I+ + ++ ++  H T +  ++ Q Y+ CQF    A   +N+   F
Sbjct: 195 LISALTYILLILNIWKKSKHLTSAKLNKPQNYIMCQFLLIIASKFINIPIFF 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,750,669
Number of Sequences: 27780
Number of extensions: 326675
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)