Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0540
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    24   1.3  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    24   1.3  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    24   1.3  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    24   1.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.3  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.9  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 153 IVNSIAHIYQRI*YRHINTNNHLNKNISIF*CYTI 49
           I++S+++ Y+   Y + N NN+ N N      Y I
Sbjct: 81  IISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 153 IVNSIAHIYQRI*YRHINTNNHLNKNISIF*CYTI 49
           I++S+++ Y+   Y + N NN+ N N      Y I
Sbjct: 81  IISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 153 IVNSIAHIYQRI*YRHINTNNHLNKNISIF*CYTI 49
           I++S+++ Y+   Y + N NN+ N N      Y I
Sbjct: 81  IISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 153 IVNSIAHIYQRI*YRHINTNNHLNKNISIF*CYTI 49
           I++S+++ Y+   Y + N NN+ N N      Y I
Sbjct: 81  IISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 16  IMLIFFYRRHSDGIALEY*NVFIQMI-ISVNMSILNTLINMSYAINYYEWLCR 171
           I++ FFY +  D + L   N   QMI + V +++++ ++ +++ I  Y  L R
Sbjct: 377 ILVPFFYVQEDDDVKLVLLNFGWQMICLIVVIALVSIIMYIAFIILQYAGLLR 429


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 270 VVSKVNGSILYINKYHILVSFNIQYIYQ 187
           + S +N +I   N Y  L  +NI YI Q
Sbjct: 304 ISSLLNNTIHNNNNYKKLQYYNINYIEQ 331


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 270 VVSKVNGSILYINKYHILVSFNIQYIYQ 187
           + S +N +I   N Y  L  +NI YI Q
Sbjct: 315 ISSLLNNTIHNNNNYKKLQYYNINYIEQ 342


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 270 VVSKVNGSILYINKYHILVSFNIQYIYQ 187
           + S +N +I   N Y  L  +NI YI Q
Sbjct: 315 ISSLLNNTIHNNNNYKKLQYYNINYIEQ 342


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 270 VVSKVNGSILYINKYHILVSFNIQYIYQ 187
           + S +N +I   N Y  L  +NI YI Q
Sbjct: 304 ISSLLNNTIHNNNNYKKLQYYNINYIEQ 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,545
Number of Sequences: 438
Number of extensions: 4396
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)