Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0540
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23290.2 68417.m03357 protein kinase family protein contains ...    28   5.5  
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    28   5.5  

>At4g23290.2 68417.m03357 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 690

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 360 AIWFEAEINKTIVQTNFGSIHFLSECIRLFVVSKVNGSILYINKYHILVSFNIQYIY 190
           A + E + N +  QTN        + +   V++KV+GS LY N    L SF  + IY
Sbjct: 140 AEYIEYKYNTSFGQTNLTEFKSTWQALMDRVINKVDGS-LYANSIQELGSFPFRSIY 195


>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 255 NGSILYINKYHILVSF-NIQYIYQ*NFDTSTQP 160
           +GS++Y+   H LV F + Q IY  N + S QP
Sbjct: 160 DGSVIYLLANHFLVKFDSSQRIYHYNVEISPQP 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,395,406
Number of Sequences: 28952
Number of extensions: 287718
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)