Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0537
(552 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 131 9e-30
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 118 7e-26
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 97 2e-19
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 86 4e-16
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 82 1e-14
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 76 5e-13
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 76 6e-13
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 75 1e-12
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 73 6e-12
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 65 9e-10
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 64 2e-09
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 62 6e-09
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 62 6e-09
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 60 3e-08
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 58 1e-07
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 56 5e-07
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 51 2e-05
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 48 1e-04
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 39 0.089
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 38 0.15
UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia i... 37 0.27
UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr prote... 36 0.83
UniRef50_Q4TCA3 Cluster: Chromosome undetermined SCAF7039, whole... 34 1.9
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 34 2.5
UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotei... 33 4.4
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 131 bits (317), Expect = 9e-30
Identities = 58/70 (82%), Positives = 66/70 (94%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGH+GRF+IWTQSAF RLD +FGSWKTPSK+KKNFNLPQP MANTDL+RLLKS+EIR+
Sbjct: 106 APGGHVGRFMIWTQSAFERLDAIFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRR 165
Query: 225 VLRAPNKRVI 254
VLRAP KRV+
Sbjct: 166 VLRAPIKRVV 175
Score = 83.4 bits (197), Expect = 3e-15
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = +2
Query: 254 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADADKSGLKLSKRNPAM 430
RATRKLNPLTN KAMLKLNPYAAVLK+KA+L+ +RKN +AL A+K G+KL +PA+
Sbjct: 176 RATRKLNPLTNTKAMLKLNPYAAVLKKKAVLDQVKRKNKRALEVAEKRGIKLPDDDPAV 234
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 118 bits (285), Expect = 7e-26
Identities = 53/69 (76%), Positives = 60/69 (86%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGH+GRFVIWT+SAF RL+ LFG+WK PS KK +NLPQP MANTDL+RLLKS+EIRK
Sbjct: 244 APGGHVGRFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEEIRK 303
Query: 225 VLRAPNKRV 251
VLR P KRV
Sbjct: 304 VLRDPRKRV 312
Score = 59.7 bits (138), Expect = 4e-08
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = +2
Query: 254 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADADKSGLKLSK 415
R+ R+LNPLTN + ++KLNPYA VLKR+A L +R K LA A K ++L+K
Sbjct: 314 RSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRTVAKVLAKAKKQNVELAK 367
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 97.5 bits (232), Expect = 2e-19
Identities = 40/69 (57%), Positives = 54/69 (78%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGH+GRF IWT+SAF +LD L+G+W+ + K N+NLP M NTDL+R+LKS EI++
Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR 300
Query: 225 VLRAPNKRV 251
LRAP K++
Sbjct: 301 ALRAPRKKI 309
Score = 40.3 bits (90), Expect = 0.029
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +2
Query: 254 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLK 373
R K NPL N + MLKLNPYA ++R IL R L+
Sbjct: 311 RRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLR 350
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 86.2 bits (204), Expect = 4e-16
Identities = 40/74 (54%), Positives = 50/74 (67%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGH+GRF+IWT+SAF +LD +FG+ + S KK + P MA TDLTRL+ SDEI+
Sbjct: 244 APGGHVGRFIIWTKSAFEKLDSIFGTSTSKSASKKGWKPPTNIMAQTDLTRLINSDEIQS 303
Query: 225 VLRAPNKRVIVLHA 266
L AP I HA
Sbjct: 304 ALNAPKLGAIRAHA 317
Score = 35.1 bits (77), Expect = 1.1
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 248 RDRATRKLNPLTNNKAMLKLNPYAAVLKR-KAILELRRRKNLKALADADKSGL 403
R A K NPL N AM KLNPYA V + +A + R K A ++A +S +
Sbjct: 314 RAHAPLKRNPLKNKSAMDKLNPYAKVAREMQARAQEERSKAKAAKSNAARSAV 366
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 81.8 bits (193), Expect = 1e-14
Identities = 35/63 (55%), Positives = 46/63 (73%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGHLGRF++WT SAFG LD ++GS PS KK+F LP M DL++++ S +I+K
Sbjct: 223 APGGHLGRFIVWTSSAFGALDTIYGSTTEPSALKKDFLLPSTMMKQPDLSKIINSSDIQK 282
Query: 225 VLR 233
VLR
Sbjct: 283 VLR 285
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 76.2 bits (179), Expect = 5e-13
Identities = 35/73 (47%), Positives = 51/73 (69%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGG LGRFVIWTQSAF LD LFG+++ S K + L +P + N DL R++ S+++++
Sbjct: 89 APGGQLGRFVIWTQSAFANLDKLFGTYRYSSILKDGYQLLRPLLTNPDLARIINSNQVQE 148
Query: 225 VLRAPNKRVIVLH 263
++A K+ VLH
Sbjct: 149 KVQAA-KQTTVLH 160
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 75.8 bits (178), Expect = 6e-13
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGG LGRFVIWTQSAF LD LFG+++ S K + L +P + N DL R++ S+++++
Sbjct: 243 APGGQLGRFVIWTQSAFAHLDKLFGTYRYASVLKDGYQLLRPLLTNPDLARIINSNQVQE 302
Query: 225 VLRAPNKRVIVLH 263
++ P K VLH
Sbjct: 303 KVQ-PAKTTKVLH 314
Score = 32.7 bits (71), Expect = 5.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 263 RKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADADKSGLKLSK 415
+K NPL N KAM +LNPYA + A+ ++ +K+ K SK
Sbjct: 317 QKKNPLKNTKAMDRLNPYAKKQRAAAVAAIKANTKGTKKIKKNKALKKASK 367
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 74.9 bits (176), Expect = 1e-12
Identities = 32/64 (50%), Positives = 45/64 (70%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGHLGRF+IW+ SAF LD ++G+ PS KK+F LP ++ D+ RL+ S E++
Sbjct: 246 APGGHLGRFIIWSSSAFKALDNIYGTTTAPSALKKDFLLPSNVVSQADIGRLINSSELQS 305
Query: 225 VLRA 236
V+RA
Sbjct: 306 VIRA 309
Score = 33.9 bits (74), Expect = 2.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 236 SQQTRDRATRKLNPLTNNKAMLKLNPYAAVLKRKAI 343
S T+ +K NPL N + +L+LNPYAA ++ I
Sbjct: 313 SALTKRAGVQKKNPLLNKQVLLRLNPYAAGYSKEKI 348
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 72.5 bits (170), Expect = 6e-12
Identities = 30/68 (44%), Positives = 47/68 (69%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGHLGRF+IWT+ A+ +LD L+G+ + K + P P++ NTDL+R++ S ++
Sbjct: 241 APGGHLGRFIIWTEGAYKKLDKLYGTRFRTALLKNEYKHPTPSVTNTDLSRIIHSPTVQS 300
Query: 225 VLRAPNKR 248
VL+A K+
Sbjct: 301 VLKARGKQ 308
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 65.3 bits (152), Expect = 9e-10
Identities = 28/63 (44%), Positives = 40/63 (63%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGG GR I+T+ A RL ++GS+ S K + LP+P M N D+TR++ S E++
Sbjct: 244 APGGTFGRLTIFTKGAIKRLQEIYGSYTHGSSSKVGYTLPRPAMTNADITRIINSTEVQS 303
Query: 225 VLR 233
VLR
Sbjct: 304 VLR 306
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 64.5 bits (150), Expect = 2e-09
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = +3
Query: 90 AFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRKVLRAPNKRV 251
AF +LD L+G+W + K N+NLP M NTDL+R+LKS EI++ L+AP K++
Sbjct: 95 AFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALQAPRKKI 148
Score = 40.3 bits (90), Expect = 0.029
Identities = 23/51 (45%), Positives = 28/51 (54%)
Frame = +2
Query: 254 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADADKSGLK 406
R K NPL N MLKLNPYA ++R I LR+ KN K D + L+
Sbjct: 150 RRVLKKNPLKNLGIMLKLNPYAKTMRRNTI--LRQAKNHKLRMDKSAAALE 198
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 62.5 bits (145), Expect = 6e-09
Identities = 27/54 (50%), Positives = 37/54 (68%)
Frame = +3
Query: 90 AFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRKVLRAPNKRV 251
AF +LD L+G+W + K N+NLP M NTDL+R+LK I++ LRAP KR+
Sbjct: 173 AFCKLDDLYGTWPKAASLKSNYNLPMHKMLNTDLSRILKRPGIQRALRAPRKRI 226
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 62.5 bits (145), Expect = 6e-09
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APG H+GRF+IWT+SAF +L+ +FG+ K ++ K F + MA D+ R++ + E K
Sbjct: 243 APGCHIGRFIIWTESAFKKLNTIFGTQKKMAQGKSGFRIAHAQMAVPDMKRVVVAAEKAK 302
Query: 225 VLRA 236
+LRA
Sbjct: 303 LLRA 306
Score = 32.3 bits (70), Expect = 7.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 254 RATRKLNPLTNNKAMLKLNPYAAVLKRK 337
+ ++ NPL N AM+KLNPYA + K
Sbjct: 312 KVPKRANPLKNWAAMVKLNPYAKIASHK 339
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 60.5 bits (140), Expect = 3e-08
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGG +GR IW++ AF +LD ++G KKN+ LP+P + N D+ R++ SD+++
Sbjct: 241 APGGSIGRLCIWSEDAFKKLDVIYGKTFQKYVTKKNYILPKPIVNNADIYRIINSDQVQA 300
Query: 225 VL 230
L
Sbjct: 301 SL 302
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 58.4 bits (135), Expect = 1e-07
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGG GR +IWT+SAF +LD +FG + ++ F LP + + DL L SD ++
Sbjct: 237 APGGVAGRLIIWTESAFEKLDKIFGGVEREAELTPGFKLPNRIVTHDDLEELFYSDAVQA 296
Query: 225 VLRAP 239
+L P
Sbjct: 297 ILDEP 301
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 56.0 bits (129), Expect = 5e-07
Identities = 26/72 (36%), Positives = 44/72 (61%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APG H GR ++WT+SAF LD ++ + K+N+ LP+ + TD+ R+L+SD ++K
Sbjct: 228 APGSHPGRLILWTKSAFASLDDVYAA-------KQNYTLPRSCITQTDIERILQSDAVQK 280
Query: 225 VLRAPNKRVIVL 260
P + +V+
Sbjct: 281 TF-VPKRDPLVI 291
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 50.8 bits (116), Expect = 2e-05
Identities = 27/72 (37%), Positives = 40/72 (55%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
AP +GR +WT+SAF LD ++ S KK F+LP+ M N D+ ++ SD ++
Sbjct: 238 APAAQVGRLTVWTESAFKALDGIYES-------KKRFSLPRSIMTNADIEAVITSDAVQS 290
Query: 225 VLRAPNKRVIVL 260
VL K V+ L
Sbjct: 291 VLN-EKKEVVPL 301
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 48.0 bits (109), Expect = 1e-04
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 149
APGGHLGRFVIWT+S+F +LD ++ S++ ++++
Sbjct: 105 APGGHLGRFVIWTKSSFEKLDSIYRSFEKKLRRRR 139
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 38.7 bits (86), Expect = 0.089
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +2
Query: 230 PCSQQTRDRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRK-NLKALADADKSGL 403
PC ++ + R ++K NPLTN + MLKLNP A + R IL E R K +K+ ++G
Sbjct: 25 PC-KEIQHRVSKK-NPLTNLRIMLKLNPDAKTMHRNTILPEARNHKLQVKSRKQQPRTGS 82
Query: 404 KL 409
+L
Sbjct: 83 QL 84
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 37.9 bits (84), Expect = 0.15
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
AP G LGR +W++SAF LD +P + N DL+ L++S ++
Sbjct: 235 APAGALGRLCVWSKSAFEALDDYIKM------------MPTKLLKNADLSALIESTPVQA 282
Query: 225 VLRAPNK 245
LRAP +
Sbjct: 283 ALRAPRE 289
>UniRef50_Q1MQI5 Cluster: Outer membrane protein; n=1; Lawsonia
intracellularis PHE/MN1-00|Rep: Outer membrane protein -
Lawsonia intracellularis (strain PHE/MN1-00)
Length = 601
Score = 37.1 bits (82), Expect = 0.27
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +2
Query: 245 TRDRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADADKSG 400
TRD + LNP+ KA L + PY K+K IL LR R + D K+G
Sbjct: 411 TRDSSKDPLNPIQGTKATLNVTPYIGKYKKK-ILTLRSRFDFSFYIDVLKTG 461
>UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr protein;
n=1; Bos taurus|Rep: PREDICTED: similar to Hrnr protein
- Bos taurus
Length = 1606
Score = 35.5 bits (78), Expect = 0.83
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 73 SSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNQR 174
SSG H +GL+ S +G+H R++S+C QR
Sbjct: 566 SSGFGQHGSGLSQSSSYGQHGSTSRQSSSCGQQR 599
>UniRef50_Q4TCA3 Cluster: Chromosome undetermined SCAF7039, whole
genome shotgun sequence; n=2; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7039,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1333
Score = 34.3 bits (75), Expect = 1.9
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 215 DQEGPPCSQQTRDRATRKLNPLTNNKAMLK 304
D+EGPP +Q++RD+++R L N K +K
Sbjct: 499 DEEGPPANQESRDKSSRMTGCLGNRKVKVK 528
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 33.9 bits (74), Expect = 2.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPL 113
APGGHLGR IW+ AF L+ +
Sbjct: 232 APGGHLGRLCIWSSKAFQMLNTI 254
>UniRef50_Q9PQ05 Cluster: Unique hypothetical membrane lipoprotein;
n=1; Ureaplasma parvum|Rep: Unique hypothetical membrane
lipoprotein - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 705
Score = 33.1 bits (72), Expect = 4.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 260 TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADADKSGLKLSKRNPAM 430
T + A+L + Y+ VLK KA +L+ NLK + D D + L +++ P M
Sbjct: 53 TNSIELFLEGSAVLASHSYSVVLKEKATGDLKTINNLKLVKDNDLNKLIINELKPNM 109
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,503,455
Number of Sequences: 1657284
Number of extensions: 8771431
Number of successful extensions: 23695
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23679
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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