Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0537
         (552 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   3.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 166  WGRLKFFFCFDGVFHDPNK 110
            WG+ + F C  G+  D NK
Sbjct: 1299 WGKYEVFNCAPGLHWDNNK 1317


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
 Frame = +1

Query: 88  PHSAGLTPY--SGHGRHHQNKRRTSTCPNQRWPTLTSHVFSS 207
           P S G++PY  S H  HH   R     P          ++SS
Sbjct: 40  PLSLGMSPYASSQHHHHHLQARPPQDSPYDASVAAACKLYSS 81


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 319 RVRIEFQHRLVVSER 275
           R RIE  H LV+SER
Sbjct: 261 RRRIEIAHTLVLSER 275


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 319 RVRIEFQHRLVVSER 275
           R RIE  H LV+SER
Sbjct: 261 RRRIEIAHTLVLSER 275


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 319 RVRIEFQHRLVVSER 275
           R RIE  H LV+SER
Sbjct: 261 RRRIEIAHTLVLSER 275


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -3

Query: 409 QLQSTLVGISKSLQVLPSAQL*DSFPLQHGRVRIEFQHR 293
           +L+     +SK + +   ++L ++  L   +++I FQ+R
Sbjct: 170 ELEKEFTFVSKYITIKRKSELAENLGLSERQIKIWFQNR 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,015
Number of Sequences: 336
Number of extensions: 1945
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)