Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0537
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 86 4e-18
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 85 5e-18
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 1.8
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 4.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 4.2
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 5.6
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 7.4
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 25 7.4
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 25 7.4
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 7.4
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran... 25 9.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.8
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 25 9.8
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 85.8 bits (203), Expect = 4e-18
Identities = 37/64 (57%), Positives = 51/64 (79%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+
Sbjct: 241 APGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQS 300
Query: 225 VLRA 236
+++A
Sbjct: 301 IVKA 304
Score = 29.1 bits (62), Expect = 0.46
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 263 RKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 385
+K NPL N + +LNPYA KA ++L K KA +
Sbjct: 316 QKKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 85.4 bits (202), Expect = 5e-18
Identities = 37/64 (57%), Positives = 51/64 (79%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+
Sbjct: 241 APGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQS 300
Query: 225 VLRA 236
+++A
Sbjct: 301 IVKA 304
Score = 28.7 bits (61), Expect = 0.60
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 263 RKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 385
+K NPL N + +LNPYA KA +++ K KA +
Sbjct: 316 QKKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 61 LDVSSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNQRWPTLTSH 195
+D+ S+ LS H+ T +S R H ST P+Q + + SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 121 HGRHHQNKRRTSTCPNQRW 177
HG H S CPN+RW
Sbjct: 378 HGGHTNRISEFSWCPNERW 396
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = -3
Query: 379 KSLQVLPSAQL*DSFPLQHGRVRIEFQHRLVVSERVQFACSTITRLL 239
+SLQ LP+ +L + + + F+ RL++++ + C+ ++++L
Sbjct: 680 ESLQKLPAEELMRQKEINSLKTTMSFRPRLLITDIYGYGCTYLSKVL 726
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 154 STCPNQRWPTLTSHVFSSLMRSGRSS-VLPTNA*SCYTQIEP 276
S NQ+ P + + + ++G+ S +LPT SC IEP
Sbjct: 621 SPSKNQKPPKILTKIPDIFSKAGKKSPILPTFQESCSLPIEP 662
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 67 VSSSGLSPHSAGLTPYSGHGRHHQNK 144
VS S HS P+S GRH++ K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 136 QNKRRTSTCPNQRWPTLTS 192
Q KR TS C ++ WP L S
Sbjct: 313 QVKRETSDCYHETWPMLQS 331
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 278 AGSICV*HDHAFVGSTEDLPDLIRLEKTCEVSVGHRWLGQVE 153
AGSI + +H + EDL ++ LE + ++GQ E
Sbjct: 16 AGSILLLFNHGSIEGMEDLTEISMLEDYTPEAANKDYVGQQE 57
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +3
Query: 78 WTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDL 191
W + F + G+WK P + ++ + T TDL
Sbjct: 113 WEKDPFAPISVKSGAWKKPYTKVPEVSINKATSKRTDL 150
>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
N-methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 429 IAGFRLD-SFNPLLSASARAFKFFLLRSSKIAFLFSTAA*GLSFSIALLLVSGFNLRVAR 253
++GF + + NP+ + S F LR K+A L T + IAL F ++
Sbjct: 151 VSGFPFNVNDNPMYNGSTLCFLSTALRYGKVAGLLLTLEVFFVYRIALKFEEPFTAKIYA 210
Query: 252 SR 247
+R
Sbjct: 211 AR 212
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 126 KTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRKVLRAPN 242
KTPS +K+ P P + N D L ++ V + P+
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS 624
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 52 EVILDVSSSGLSPHSAGLTPYSGHG 126
E IL S G+SP G+T HG
Sbjct: 35 EQILKFSKKGMSPSQIGVTLRDSHG 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,074
Number of Sequences: 5004
Number of extensions: 35156
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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