Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0537
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 94 8e-20
07_01_0578 + 4295386-4296489,4297394-4297507 93 2e-19
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 0.46
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 1.1
02_04_0073 - 19471254-19472681 29 3.3
10_08_0809 - 20725858-20725950,20726375-20726545,20726895-207271... 28 5.7
03_03_0125 - 14630078-14630136,14630197-14631160 28 5.7
03_03_0122 - 14617879-14618871 28 5.7
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 5.7
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 27 7.5
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 27 10.0
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 93.9 bits (223), Expect = 8e-20
Identities = 40/69 (57%), Positives = 54/69 (78%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGHLGRFVIWT+ AF +LD ++G + TP+ +KK F LP+P MAN DL+RL+ SDE++
Sbjct: 245 APGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQS 304
Query: 225 VLRAPNKRV 251
V++ NK V
Sbjct: 305 VVKPINKEV 313
Score = 33.1 bits (72), Expect = 0.15
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 230 PCSQQTRDRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADADKSGL 403
P +++ + R R+ NPL N A+LKLNPY ++ A L E R K D+ ++ L
Sbjct: 308 PINKEVKLREARR-NPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKL 365
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 92.7 bits (220), Expect = 2e-19
Identities = 39/69 (56%), Positives = 55/69 (79%)
Frame = +3
Query: 45 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
APGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK F LP+P MAN DL R++ SDE++
Sbjct: 246 APGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQS 305
Query: 225 VLRAPNKRV 251
V++ NK V
Sbjct: 306 VVKPLNKEV 314
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 230 PCSQQTRDRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADADKSGL 403
P +++ + R RK NPL N A+LKLNPY ++ A L E R K K D+ ++ L
Sbjct: 309 PLNKEVKRREKRK-NPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.5 bits (68), Expect = 0.46
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 31 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNQ--RWPTLTSHVFS 204
+S S+LR + LD+SSS +P S+ H HHQ + + WP S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435
Query: 205 SLMRSGRSSVLPTNA 249
++ SG LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 45 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANT 185
APG G GR+V+ SA LDP F SW S++ K F++ + + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>02_04_0073 - 19471254-19472681
Length = 475
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 85 SPHSAGLTPYSGHGRHHQNKRRTSTCPNQRWPTLTSHVFSSLMR 216
+P G +P S HG HH++++ T N + L V ++R
Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNNVKITVLCGLVTILVLR 63
>10_08_0809 -
20725858-20725950,20726375-20726545,20726895-20727101,
20727208-20727879
Length = 380
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 376 SLQVLPSAQL*DSFPLQHGRVRIEFQHRLVVSERVQFACSTITRLL 239
+L+ PS+ + PL R E + R S R++ AC+ I LL
Sbjct: 272 TLKPPPSSSSGEETPLIRNSTRFEVERRENGSTRIEMACAAIPELL 317
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 63 GRFVIWTQSAFGRL-DPLFGSWK 128
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 63 GRFVIWTQSAFGRL-DPLFGSWK 128
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 95 ECGLSPDDETSKMTSRSQLQEVQ 27
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 70 SSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNQRWPTLTS 192
SSSG S S + +SG+ HH K PN + T+
Sbjct: 394 SSSGASSASKNNSSHSGYHHHHHQKPLVKAEPNDQSAAATT 434
>02_05_0959 +
33086498-33086544,33087295-33087967,33088665-33089058,
33089140-33089210,33089373-33089497,33089705-33089821,
33094128-33094238,33094321-33094413,33094726-33094984,
33095067-33095189
Length = 670
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 337 FPLQHGRVRIEFQHRLVVSERVQFACSTITRLLGARRT 224
F + G+ R+ H L VSE +Q + + L+GA RT
Sbjct: 440 FSSEQGQDRLIDLHGLQVSEAIQVVKAELALLMGATRT 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,893
Number of Sequences: 37544
Number of extensions: 260678
Number of successful extensions: 677
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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