Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0537
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                45   5e-05
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_33997| Best HMM Match : Astacin (HMM E-Value=0)                     28   4.4  
SB_17500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = +2

Query: 254 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADADKSG 400
           RA  K NPL N   ML+LNPYA   KR  +L + RR+  K  A A K G
Sbjct: 250 RAIHKKNPLKNLGTMLRLNPYAKSAKRAEMLTVERRRAAKEAALAKKRG 298


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 129 TPSKQKKNFNLPQPTMANTDLTRLLKSDEIRKVLRAPNKRVI 254
           TP++Q   F   +  ++N D++RL  S+    + ++ N RVI
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVI 843


>SB_33997| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 507

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 127 RHHQNKRRTSTCPNQRWPTLT 189
           +HH+ KR  ++  NQ+WP  T
Sbjct: 223 KHHRGKRAAASSDNQKWPRNT 243


>SB_17500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +2

Query: 215 DQEGPPCSQQTRDRATRKLNPLT--NNKAMLKLNPYAAVLKRKAILELRRRKNLKALA-D 385
           D E    +++       K N LT   N+   K + YAA+   +A++++R+  N+K +   
Sbjct: 272 DPEARISAKEALSHPALKENELTIEENEPKAKRHFYAAICGIRAMIKMRKA-NVKGIGRQ 330

Query: 386 ADKSGLKLSKRNP 424
             +SG+ L+ R+P
Sbjct: 331 LSESGVDLTPRSP 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,588
Number of Sequences: 59808
Number of extensions: 275796
Number of successful extensions: 834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)