Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0537
         (552 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    25   2.2  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   2.9  
DQ437578-1|ABD96048.1|  234|Anopheles gambiae short neuropeptide...    23   5.0  
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    23   5.0  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   8.8  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   8.8  

>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = +3

Query: 117 GSWKTPSKQKKNFNLPQPTMA------NTDLTRLLK 206
           G  K P K+KK  +LP+P         N DL ++LK
Sbjct: 153 GQSKQPKKKKKKRSLPKPEAVVIEKCENIDLAKVLK 188


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 118 PNKGSSLPNAD*VQMTKRPR*PPGA 44
           P  G   P    V M  RP+ PPGA
Sbjct: 212 PRPGGMYPQPPGVPMPMRPQMPPGA 236


>DQ437578-1|ABD96048.1|  234|Anopheles gambiae short neuropeptide F
           prepropeptide protein.
          Length = 234

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
 Frame = +3

Query: 93  FGRLDPLFGSWKTPSKQKKNFNLPQPTM------ANT--DLTRLLKSDEI--RKVLRAPN 242
           FGR DPL+ S+   +  ++NF    P+       +N   +L    + D++  +K +RAP 
Sbjct: 101 FGRNDPLWTSFNENALLEENFEKRAPSQRLRWGRSNLFGNLVNQFQQDDVMQQKTIRAPQ 160

Query: 243 KRV 251
            R+
Sbjct: 161 LRL 163


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 127 RHHQNKRRTSTCPNQRWPTLTSHVFSSL--MRSGRSSVLPTNA 249
           +  Q ++R    P Q+WPT+   V +    +    SS +P  A
Sbjct: 196 QQQQKQQRQQRLPAQQWPTVQQSVRAQRQGVTESASSAVPDEA 238


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 541 LPSSWEEAGSSSNRLLG 491
           +PSSW +  S  NR  G
Sbjct: 691 VPSSWRDVESRDNRFAG 707


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 45   APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQ 167
            A G     +V W      RL P  G+W++    + NF+L Q
Sbjct: 901  AAGHQASGYVRWAH----RLIPDIGAWQSRKHGEVNFHLSQ 937


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,339
Number of Sequences: 2352
Number of extensions: 8128
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51301854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)