Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0537
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    84   7e-17
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    27   9.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 37/78 (47%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
 Frame = +3

Query: 45  APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPTMANTDLTRLLKSDEIR 221
           APGGHLGR +IWT+SAF +LD ++G+    S Q KK +++P P MAN+D +R+++S+E+ 
Sbjct: 240 APGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVV 299

Query: 222 KVLRAPNKRVIV--LHAN 269
           K +RAP K  ++  +H N
Sbjct: 300 KAIRAPKKNPVLPKVHRN 317



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 272 NPLTNNKAMLKLNPYAAVLKRKAILELRR 358
           NPL     + KLNPYA++L++ +   +++
Sbjct: 317 NPLKKRTLLYKLNPYASILRKASKANVKK 345


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/67 (22%), Positives = 27/67 (40%)
 Frame = +3

Query: 63   GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRKVLRAPN 242
            G F+  T    G     F   +TP   +  +N   P  A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 243  KRVIVLH 263
            K  + ++
Sbjct: 2849 KEFVEIY 2855


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/67 (22%), Positives = 27/67 (40%)
 Frame = +3

Query: 63   GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRKVLRAPN 242
            G F+  T    G     F   +TP   +  +N   P  A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 243  KRVIVLH 263
            K  + ++
Sbjct: 2849 KEFVEIY 2855


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 64  DVSSSGLSPHSAGLTPYSG---HGRHHQNKRRTSTCPNQRWPTLTSHVFSSLMRSGRSSV 234
           + ++S   P+S   TP S     G+ H+     S      +PT+     SS+M S  S  
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591

Query: 235 LPTNA 249
           LP+ +
Sbjct: 592 LPSTS 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,394,681
Number of Sequences: 27780
Number of extensions: 198992
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)