Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0537
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    85   3e-17
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    84   5e-17
At3g47770.1 68416.m05204 ABC transporter family protein AbcA, Di...    29   2.1  
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    28   3.6  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    27   6.3  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 36/67 (53%), Positives = 51/67 (76%)
 Frame = +3

Query: 45  APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
           APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK + LP+  M N DL R++ SDEI+ 
Sbjct: 247 APGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQS 306

Query: 225 VLRAPNK 245
           V+    K
Sbjct: 307 VVNPIKK 313



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +2

Query: 254 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLK 373
           RA  K NPL N   MLKLNPYA   KR ++L   +R   K
Sbjct: 317 RAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAK 356


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 34/62 (54%), Positives = 50/62 (80%)
 Frame = +3

Query: 45  APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPTMANTDLTRLLKSDEIRK 224
           APGGHLGRFVIWT+SAF +L+ ++GS++ PS++KK + LP+  M N DL R++ SDE++ 
Sbjct: 248 APGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQS 307

Query: 225 VL 230
           V+
Sbjct: 308 VV 309



 Score = 37.1 bits (82), Expect = 0.008
 Identities = 19/40 (47%), Positives = 21/40 (52%)
 Frame = +2

Query: 254 RATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLK 373
           RA  K NPL N   M KLNPYA   KR ++L    R   K
Sbjct: 318 RAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAK 357


>At3g47770.1 68416.m05204 ABC transporter family protein AbcA,
           Dictyostelium discoideum, U66526
          Length = 900

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 396 LLSASARAFKFFLLRSSKIAFLFSTAA*GLSFSIALLLVSGFNLRVARSRVCW 238
           ++  SA   KFF      I F+F      L  SIA L+ S F+  V  S V +
Sbjct: 375 MIFGSAIGLKFFRFNDYTIQFMFYFLYINLQISIAFLVSSAFSKAVTASVVAY 427


>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 396 LLSASARAFKFFLLRSSKIAFLFSTAA*GLSFSIALLLVSGFN 268
           ++  S    KFFLL    + F F      L  SIA LL S F+
Sbjct: 419 MIFGSVIGLKFFLLNDFSLQFSFYFVYINLQISIAFLLSSAFS 461


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 88  PHSAGLTPYSGHGRHHQNKRRTSTCPNQRWPTLTSHVFSSLMRSGRSSVLP 240
           P S    P S H +HHQ +++ +  P      L  H+ S    + + S+ P
Sbjct: 335 PSSPSPPPLSSHHQHHQERKKIADSPAP--SPLPPHLISPKKSNRKGSMTP 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,215,973
Number of Sequences: 28952
Number of extensions: 199464
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)