Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0535
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   108   7e-25
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   107   9e-25
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    29   0.70 
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    27   1.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.8  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    26   3.7  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   3.7  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    25   6.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.6  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  108 bits (259), Expect = 7e-25
 Identities = 47/82 (57%), Positives = 62/82 (75%)
 Frame = +1

Query: 259 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 438
           RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+S
Sbjct: 82  RWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 439 SPCHIEVCLSEREDAVARVAPT 504
           SP HIE+ ++E E+AV +   T
Sbjct: 142 SPSHIEIIVAEEEEAVPKANDT 163



 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 44/84 (52%), Positives = 53/84 (63%)
 Frame = +2

Query: 17  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIPF 196
           M RYS  P    K  KARG+ LR HFKN+ E A     M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 197 RRFNGGVGRCAQAKQFGTTRVAGP 268
           RRFNGGVGR AQ K+FG T+   P
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWP 84


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  107 bits (258), Expect = 9e-25
 Identities = 47/82 (57%), Positives = 61/82 (74%)
 Frame = +1

Query: 259 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 438
           RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RRRTYRAHGR+  Y+S
Sbjct: 82  RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 439 SPCHIEVCLSEREDAVARVAPT 504
           SP HIE+ ++E E+AV +   T
Sbjct: 142 SPSHIEIIVAEEEEAVPKANDT 163



 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 44/84 (52%), Positives = 53/84 (63%)
 Frame = +2

Query: 17  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEKKECIPF 196
           M RYS  P    K  KARG+ LR HFKN+ E A     M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 197 RRFNGGVGRCAQAKQFGTTRVAGP 268
           RRFNGGVGR AQ K+FG T+   P
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWP 84


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 345 QASYRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 464
           Q+ +   S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 229 SSKAVWHNTGRWPKKSAE 282
           SSK +W  +GRW K  +E
Sbjct: 80  SSKEIWEKSGRWQKTGSE 97


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 254 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 171
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 253 TGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQ 369
           TG  P   + FLLQ+L + +  A N  L +DR++  + Q
Sbjct: 80  TGLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLFQNAQ 118


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 77  NLRVHFKNTYETAMANRKMPLRRAVRYLKNVIEK-KECI 190
           NLRV  K T ++ ++    P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 42  ITLRNHAKRVVQTSVFTLRTHMRPQWQTERCRSVVLFVTSKT*LKRKSVFH 194
           + L NH   V + ++F +  H   QW T   +  +L  T +  L      H
Sbjct: 128 VLLYNHQGFVTEATIFNVAFHRNGQWITPSLKHGLLSGTMRKNLLENGSIH 178


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 431 TCRLPATSKYVSANAKMLSLG*PLLMCPS 517
           T  LPA + Y S N K  S   P+L  P+
Sbjct: 291 TTPLPAAASYTSMNMKQSSASHPVLQPPA 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,723
Number of Sequences: 5004
Number of extensions: 49235
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)